Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq14187 147 7e-32 >seq14187 Length=3355950 Score = 147 bits (162), Expect = 7e-32 Identities = 242/354 (68%), Gaps = 1/354 (0%) Strand=Plus/Plus Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390 ||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| ||| Sbjct 1819729 AAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 1819788 Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450 || || | | | | ||| ||||||||||||| |||||||||||||||||||| Sbjct 1819789 GCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCT 1819848 Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510 || || ||| |||| ||||||||||| |||||||||||||| || Sbjct 1819849 TTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAAA 1819908 Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATG 1569 | || | | || || ||||| ||||| ||||| || | | || ||||||||||| Sbjct 1819909 ATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAATG 1819968 Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629 |||| ||||| ||| | || | | || || |||| ||| |||| | | ||| Sbjct 1819969 TAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGTG 1820028 Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGA 1683 | | ||| ||||||||| ||| ||| | ||||| || | || |||| || Sbjct 1820029 TACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA 1820082 Score = 122 bits (134), Expect = 3e-24 Identities = 217/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084 |||||||| ||| | ||||| ||| | |||| ||||||| || ||||||| || Sbjct 1821544 CCCCTGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCA 1821603 Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143 |||||||||||||| ||||||| | | ||||| || || | || || |||| Sbjct 1821604 GCGGCTCATCAACAACTACTGGGG-CATCCAACCAAAGGCTCACAGAATCAAAATTTTCA 1821662 Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202 |||| |||||||||||||||| | | | | | || | | ||| | |||| ||||| Sbjct 1821663 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACCTA 1821721 Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGT-GATGGATGC 3261 || || ||||||| ||||| || ||| ||| |||| || || || | |||| Sbjct 1821722 ACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGA--A 1821779 Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320 | | || ||||| |||||||| |||| ||| || || || ||| ||||||||||| Sbjct 1821780 ATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACT 1821839 Query 3321 GGTACTGC 3328 |||||||| Sbjct 1821840 GGTACTGC 1821847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14900592859610