Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 147 7e-32
>seq14187
Length=3355950
Score = 147 bits (162), Expect = 7e-32
Identities = 242/354 (68%), Gaps = 1/354 (0%)
Strand=Plus/Plus
Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390
||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| |||
Sbjct 1819729 AAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 1819788
Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450
|| || | | | | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1819789 GCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCT 1819848
Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510
|| || ||| |||| ||||||||||| |||||||||||||| ||
Sbjct 1819849 TTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAAA 1819908
Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATG 1569
| || | | || || ||||| ||||| ||||| || | | || |||||||||||
Sbjct 1819909 ATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAATG 1819968
Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629
|||| ||||| ||| | || | | || || |||| ||| |||| | | |||
Sbjct 1819969 TAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGTG 1820028
Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGA 1683
| | ||| ||||||||| ||| ||| | ||||| || | || |||| ||
Sbjct 1820029 TACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA 1820082
Score = 122 bits (134), Expect = 3e-24
Identities = 217/308 (70%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084
|||||||| ||| | ||||| ||| | |||| ||||||| || ||||||| ||
Sbjct 1821544 CCCCTGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCA 1821603
Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143
|||||||||||||| ||||||| | | ||||| || || | || || ||||
Sbjct 1821604 GCGGCTCATCAACAACTACTGGGG-CATCCAACCAAAGGCTCACAGAATCAAAATTTTCA 1821662
Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202
|||| |||||||||||||||| | | | | | || | | ||| | |||| |||||
Sbjct 1821663 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACCTA 1821721
Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGT-GATGGATGC 3261
|| || ||||||| ||||| || ||| ||| |||| || || || | ||||
Sbjct 1821722 ACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGA--A 1821779
Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320
| | || ||||| |||||||| |||| ||| || || || ||| |||||||||||
Sbjct 1821780 ATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACT 1821839
Query 3321 GGTACTGC 3328
||||||||
Sbjct 1821840 GGTACTGC 1821847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14900592859610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |