Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 277 6e-71
>seq14187
Length=3355950
Score = 277 bits (306), Expect = 6e-71
Identities = 289/376 (77%), Gaps = 5/376 (1%)
Strand=Plus/Plus
Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579
|| |||||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | |
Sbjct 1819720 GAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 1819779
Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639
|| | ||||||||||||| ||||| || || |||||||||| |||||||||||||||
Sbjct 1819780 ATCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 1819839
Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699
||||| || || |||||||| || ||||| ||| | || ||||||||||| ||||| |||
Sbjct 1819840 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 1819899
Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758
|||| ||| | || | || || ||||| || |||| ||||| ||||| | | |||||
Sbjct 1819900 ACCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGA 1819959
Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818
|||||| ||||| || ||||| |||||||| | |||||| | |||||||||||||
Sbjct 1819960 TCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATAT 1820019
Query 1819 TGATATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCTTTG 1876
||| ||| | || ||||| || ||||| ||||||| | ||| ||||||
Sbjct 1820020 ATATAAGTGTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAA--CCTTTG 1820077
Query 1877 GAGGAAAGAATGTTCC 1892
|||||| |||| ||||
Sbjct 1820078 GAGGAAGGAATCTTCC 1820093
Score = 161 bits (178), Expect = 3e-36
Identities = 294/423 (70%), Gaps = 12/423 (3%)
Strand=Plus/Plus
Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCA 3316
|| ||||||||||| |||| ||| | || |||||| || |||| ||||| | |||
Sbjct 1821534 GGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCC 1821592
Query 3317 AGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTC 3376
||||||| ||| | |||||||||||| | ||||| || ||| || || | || | ||
Sbjct 1821593 TGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCACAGAATC 1821652
Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAG--ACAAAGACTATTG 3434
|| || ||||| | |||||||| || |||| | | || ||| |||||||| ||||
Sbjct 1821653 AAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAG--CAGGCACAAAGACAATTG 1821710
Query 3435 CTAACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATG 3494
| || ||||| || || || |||||||| || | ||| | | |||||||||| ||||
Sbjct 1821711 CCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATG 1821770
Query 3495 TTCTGGGCTCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGC 3554
| | || ||||| |||||| |||| | || ||| ||||| | | ||||
Sbjct 1821771 TGGTTGGAAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGC 1821830
Query 3555 CCCAGTACGGCTACTGCACAATGCACACCA--ACCAGAGTGGAGCGAGATTC---AATGA 3609
| |||||| | |||||||| |||| | | | ||||| ||| | | || | | |
Sbjct 1821831 CTCAGTACTGGTACTGCACTGTGCATATGAAGAGCAGAG-GGAAC-ACATCCCCTACTCC 1821888
Query 3610 CAGAAGTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAA 3669
| || || |||||| |||| ||||| | ||||||||||| | || || |||||
Sbjct 1821889 ACGCTCAGCTTTTTATTGCCTAGAATACTTTTCTAGTCAGATGCTTCGCACTGGCAATAA 1821948
Query 3670 TTT 3672
|||
Sbjct 1821949 TTT 1821951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16304920954365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |