Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq14187 277 6e-71 >seq14187 Length=3355950 Score = 277 bits (306), Expect = 6e-71 Identities = 289/376 (77%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579 || |||||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | | Sbjct 1819720 GAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 1819779 Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639 || | ||||||||||||| ||||| || || |||||||||| ||||||||||||||| Sbjct 1819780 ATCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 1819839 Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699 ||||| || || |||||||| || ||||| ||| | || ||||||||||| ||||| ||| Sbjct 1819840 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 1819899 Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758 |||| ||| | || | || || ||||| || |||| ||||| ||||| | | ||||| Sbjct 1819900 ACCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGA 1819959 Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818 |||||| ||||| || ||||| |||||||| | |||||| | ||||||||||||| Sbjct 1819960 TCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATAT 1820019 Query 1819 TGATATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCTTTG 1876 ||| ||| | || ||||| || ||||| ||||||| | ||| |||||| Sbjct 1820020 ATATAAGTGTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAA--CCTTTG 1820077 Query 1877 GAGGAAAGAATGTTCC 1892 |||||| |||| |||| Sbjct 1820078 GAGGAAGGAATCTTCC 1820093 Score = 161 bits (178), Expect = 3e-36 Identities = 294/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCA 3316 || ||||||||||| |||| ||| | || |||||| || |||| ||||| | ||| Sbjct 1821534 GGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCC 1821592 Query 3317 AGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTC 3376 ||||||| ||| | |||||||||||| | ||||| || ||| || || | || | || Sbjct 1821593 TGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCACAGAATC 1821652 Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAG--ACAAAGACTATTG 3434 || || ||||| | |||||||| || |||| | | || ||| |||||||| |||| Sbjct 1821653 AAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAG--CAGGCACAAAGACAATTG 1821710 Query 3435 CTAACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATG 3494 | || ||||| || || || |||||||| || | ||| | | |||||||||| |||| Sbjct 1821711 CCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATG 1821770 Query 3495 TTCTGGGCTCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGC 3554 | | || ||||| |||||| |||| | || ||| ||||| | | |||| Sbjct 1821771 TGGTTGGAAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGC 1821830 Query 3555 CCCAGTACGGCTACTGCACAATGCACACCA--ACCAGAGTGGAGCGAGATTC---AATGA 3609 | |||||| | |||||||| |||| | | | ||||| ||| | | || | | | Sbjct 1821831 CTCAGTACTGGTACTGCACTGTGCATATGAAGAGCAGAG-GGAAC-ACATCCCCTACTCC 1821888 Query 3610 CAGAAGTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAA 3669 | || || |||||| |||| ||||| | ||||||||||| | || || ||||| Sbjct 1821889 ACGCTCAGCTTTTTATTGCCTAGAATACTTTTCTAGTCAGATGCTTCGCACTGGCAATAA 1821948 Query 3670 TTT 3672 ||| Sbjct 1821949 TTT 1821951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16304920954365