Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq14187 136 1e-28 >seq14187 Length=3355950 Score = 136 bits (150), Expect = 1e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 3813 ATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATT 3872 ||| |||||| || | ||||| ||||||||||| |||||||| | || ||||| ||| Sbjct 1822665 ATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATT 1822724 Query 3873 TTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGA 3932 |||| ||| ||| | ||||| || ||||| | |||||||| || || ||||||||| Sbjct 1822725 TTCAGCCTCATCCTAACATGGGAGGCTTTGGGTACAAACATCCACCTCCAATGATTCTGC 1822784 Query 3933 TCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTA 3992 |||||||| ||||| ||||| || ||||| | |||||| | || ||| | Sbjct 1822785 AGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAGT 1822844 Query 3993 GTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGA 4052 ||| |||| | | || || || || ||||| || ||||| |||||| | | Sbjct 1822845 CTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGAGAAAAT 1822904 Query 4053 AAGAATCCTCCAAAAGATGGAATCCAGA 4080 ||||||| |||| | ||||||||||| Sbjct 1822905 CAGAATCCAGCAAATGCTGGAATCCAGA 1822932 Score = 104 bits (114), Expect = 7e-19 Identities = 201/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 ||||||| ||| | |||||||| || |||| ||||||| ||| ||||||| || Sbjct 1821545 CCCTGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAG 1821604 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAAC 2950 | |||||||||||| || |||||| || || | | || ||||||| | || ||| Sbjct 1821605 CGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAAC 1821664 Query 2951 GTCCAAGTCAAAGAAGTTA-CAACACAAGATTCAACGAAAACAATTGCCAACAATCTCAC 3009 | ||||| || || || | | || | | || || ||||||||||| || || || Sbjct 1821665 ATACAAGTTAAGGAGGTCATGGAGGCAGCAGGC-ACAAAGACAATTGCCAATAACCTAAC 1821723 Query 3010 CAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTGC 3069 ||| | ||||| ||||| || || | ||| | | |||||||| | || | ||| Sbjct 1821724 ATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGC 1821783 Query 3070 TACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123 || | || || ||| | |||||| |||||| |||||||| || || || Sbjct 1821784 CACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 1821837 Score = 98.7 bits (108), Expect = 3e-17 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | ||| |||||||| | || | || || || ||| |||| || | ||||| | Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 |||||||| | ||||| | | | || ||| || ||||||||||| |||||||| Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 ||| | |||| || || || | || ||||||||||| || |||||||| | || Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAA 1819907 Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGT 1501 ||| || | | | |||||| || |||| || || ||||| Sbjct 1819908 AATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGT 1819949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14065673422865