Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq14187 226 8e-56 >seq14187 Length=3355950 Score = 226 bits (250), Expect = 8e-56 Identities = 327/460 (71%), Gaps = 1/460 (0%) Strand=Plus/Plus Query 1216 CGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGC 1275 || |||||| ||| |||| | | ||| |||| || ||||| | |||||||| | Sbjct 1819623 CGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGTGAATCGGTACGACCCCGT 1819682 Query 1276 CTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGT 1335 || || | | |||||| ||||| | ||| ||||||||| | ||| || | Sbjct 1819683 CTTGGCAGCAAACATCCTAGTTCGCTGGGCCCGGCGGGAGTTCAACAAGTGCAACGCCAT 1819742 Query 1336 CTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACAC 1395 |||| ||||| |||| || || ||| ||||||| | ||||| |||||| || |||| | Sbjct 1819743 CTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGC 1819802 Query 1396 TGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGT 1455 || ||| ||||| ||||| | |||||||| ||||| |||||||| || |||||||| || Sbjct 1819803 TGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGT 1819862 Query 1456 GGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGC 1515 || || ||| | |||||||||||||| ||||||||||||| || | || | || || Sbjct 1819863 AGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAAAATTGTAGTGTCTGC 1819922 Query 1516 CAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCAGAAATGTAAATCCTCTGTTC 1574 || ||||| |||| || || |||| |||| ||||| ||||||||| ||||| | Sbjct 1819923 TAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGC 1819982 Query 1575 AAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGATG 1634 ||||||| | | ||||| || | || |||| | | | |||| | ||| |||| Sbjct 1819983 AAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGGGGTTGATG 1820042 Query 1635 GGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 |||| ||| ||| | ||||| || | || ||||||| Sbjct 1820043 GGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA 1820082 Score = 188 bits (208), Expect = 2e-44 Identities = 237/323 (73%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 2989 CGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCA 3048 ||||||||| || ||||||||||| |||| ||| | ||||| ||| | |||| |||| Sbjct 1821524 CGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCA 1821582 Query 3049 CTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTC 3108 |||||| ||| ||||||| || | ||||||||||||||||||||| || ||| | | Sbjct 1821583 CTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGC 1821642 Query 3109 CCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCA 3167 | |||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| | Sbjct 1821643 TCACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAA 1821701 Query 3168 CNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGC 3227 || ||||| ||||| || || ||| |||| | ||| | || ||| ||||||| Sbjct 1821702 AGACAATTGCCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGC 1821761 Query 3228 TGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCT 3287 |||| || || || || || | |||||||| ||| |||| || || || | || | Sbjct 1821762 TGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTT 1821821 Query 3288 TTACGCTGCCGCAGTACGGTTAC 3310 ||| | |||| |||||| | ||| Sbjct 1821822 TTATGTTGCCTCAGTACTGGTAC 1821844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14737447682315