Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 226 8e-56
>seq14187
Length=3355950
Score = 226 bits (250), Expect = 8e-56
Identities = 327/460 (71%), Gaps = 1/460 (0%)
Strand=Plus/Plus
Query 1216 CGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGC 1275
|| |||||| ||| |||| | | ||| |||| || ||||| | |||||||| |
Sbjct 1819623 CGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGTGAATCGGTACGACCCCGT 1819682
Query 1276 CTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGT 1335
|| || | | |||||| ||||| | ||| ||||||||| | ||| || |
Sbjct 1819683 CTTGGCAGCAAACATCCTAGTTCGCTGGGCCCGGCGGGAGTTCAACAAGTGCAACGCCAT 1819742
Query 1336 CTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACAC 1395
|||| ||||| |||| || || ||| ||||||| | ||||| |||||| || |||| |
Sbjct 1819743 CTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGC 1819802
Query 1396 TGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGT 1455
|| ||| ||||| ||||| | |||||||| ||||| |||||||| || |||||||| ||
Sbjct 1819803 TGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGT 1819862
Query 1456 GGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGC 1515
|| || ||| | |||||||||||||| ||||||||||||| || | || | || ||
Sbjct 1819863 AGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAAAATTGTAGTGTCTGC 1819922
Query 1516 CAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCAGAAATGTAAATCCTCTGTTC 1574
|| ||||| |||| || || |||| |||| ||||| ||||||||| ||||| |
Sbjct 1819923 TAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGC 1819982
Query 1575 AAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGATG 1634
||||||| | | ||||| || | || |||| | | | |||| | ||| ||||
Sbjct 1819983 AAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGGGGTTGATG 1820042
Query 1635 GGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674
|||| ||| ||| | ||||| || | || |||||||
Sbjct 1820043 GGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA 1820082
Score = 188 bits (208), Expect = 2e-44
Identities = 237/323 (73%), Gaps = 3/323 (1%)
Strand=Plus/Plus
Query 2989 CGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCA 3048
||||||||| || ||||||||||| |||| ||| | ||||| ||| | |||| ||||
Sbjct 1821524 CGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCA 1821582
Query 3049 CTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTC 3108
|||||| ||| ||||||| || | ||||||||||||||||||||| || ||| | |
Sbjct 1821583 CTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGC 1821642
Query 3109 CCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCA 3167
| |||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| |
Sbjct 1821643 TCACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAA 1821701
Query 3168 CNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGC 3227
|| ||||| ||||| || || ||| |||| | ||| | || ||| |||||||
Sbjct 1821702 AGACAATTGCCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGC 1821761
Query 3228 TGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCT 3287
|||| || || || || || | |||||||| ||| |||| || || || | || |
Sbjct 1821762 TGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTT 1821821
Query 3288 TTACGCTGCCGCAGTACGGTTAC 3310
||| | |||| |||||| | |||
Sbjct 1821822 TTATGTTGCCTCAGTACTGGTAC 1821844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14737447682315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |