Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006260.1
Length=4721
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 149 2e-32
>seq14187
Length=3355950
Score = 149 bits (164), Expect = 2e-32
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345
||||||||| | ||||| ||| ||||| |||||||| | | | || || ||||
Sbjct 1819706 GCTGGGCCCGGCGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 1819765
Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405
|| ||||||| | ||| | ||| || || |||| || | ||| || || ||||| | |
Sbjct 1819766 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAA 1819825
Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465
||||||| |||||||||||||| ||||| || || || || ||||||||||| |||||||
Sbjct 1819826 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 1819885
Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG 1520
|||| || |||||||| || | || | ||| || || |||||| | || ||
Sbjct 1819886 AGGAAGGAAAGATGACCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGG 1819940
Score = 118 bits (130), Expect = 3e-23
Identities = 221/321 (69%), Gaps = 3/321 (1%)
Strand=Plus/Plus
Query 3039 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3098
||||||| || ||||||||||| |||| || | ||||| ||| || |||| |||||||
Sbjct 1821526 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACT 1821584
Query 3099 TCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGC 3158
|| | ||||| ||||| |||||||||||| ||||||| ||| || ||| |
Sbjct 1821585 GGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTC 1821644
Query 3159 TGCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGA 3218
| |||| | |||||||| || || |||||||||| | | | ||| | ||
Sbjct 1821645 ACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 1821704
Query 3219 CCATCGCTAATAACCTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGCTGC 3278
| || || |||||||| || || || ||| | || | || |||||||||||
Sbjct 1821705 CAATTGCCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 1821764
Query 3279 CGTACGTCCTCGGCTCTGCGCACC-AGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTC 3337
| || || | || ||| |||| |||| ||| ||||| | || || | || || ||
Sbjct 1821765 CATATGTGGTTGGAAATGC-CACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTT 1821823
Query 3338 ATGATTCCTCAGTACGGCTAC 3358
||| | ||||||||| | |||
Sbjct 1821824 ATGTTGCCTCAGTACTGGTAC 1821844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14990162760870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |