Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq14187 149 2e-32 >seq14187 Length=3355950 Score = 149 bits (164), Expect = 2e-32 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345 ||||||||| | ||||| ||| ||||| |||||||| | | | || || |||| Sbjct 1819706 GCTGGGCCCGGCGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 1819765 Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405 || ||||||| | ||| | ||| || || |||| || | ||| || || ||||| | | Sbjct 1819766 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAA 1819825 Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465 ||||||| |||||||||||||| ||||| || || || || ||||||||||| ||||||| Sbjct 1819826 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 1819885 Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG 1520 |||| || |||||||| || | || | ||| || || |||||| | || || Sbjct 1819886 AGGAAGGAAAGATGACCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGG 1819940 Score = 118 bits (130), Expect = 3e-23 Identities = 221/321 (69%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 3039 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3098 ||||||| || ||||||||||| |||| || | ||||| ||| || |||| ||||||| Sbjct 1821526 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACT 1821584 Query 3099 TCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGC 3158 || | ||||| ||||| |||||||||||| ||||||| ||| || ||| | Sbjct 1821585 GGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTC 1821644 Query 3159 TGCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGA 3218 | |||| | |||||||| || || |||||||||| | | | ||| | || Sbjct 1821645 ACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 1821704 Query 3219 CCATCGCTAATAACCTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGCTGC 3278 | || || |||||||| || || || ||| | || | || ||||||||||| Sbjct 1821705 CAATTGCCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 1821764 Query 3279 CGTACGTCCTCGGCTCTGCGCACC-AGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTC 3337 | || || | || ||| |||| |||| ||| ||||| | || || | || || || Sbjct 1821765 CATATGTGGTTGGAAATGC-CACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTT 1821823 Query 3338 ATGATTCCTCAGTACGGCTAC 3358 ||| | ||||||||| | ||| Sbjct 1821824 ATGTTGCCTCAGTACTGGTAC 1821844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14990162760870