Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq14187 161 3e-36 >seq14187 Length=3355950 Score = 161 bits (178), Expect = 3e-36 Identities = 326/479 (68%), Gaps = 21/479 (4%) Strand=Plus/Plus Query 2785 TGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCA 2844 ||| |||| |||| |||||||||||| | ||||| ||||| || | || ||| Sbjct 1821384 TGGATAGT-CCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCA 1821438 Query 2845 CCACCAG---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAA 2901 |||| | ||| |||| |||| | ||| ||| ||||| | ||||||||||| | Sbjct 1821439 CCACTCGTTCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGA 1821498 Query 2902 TCTCCAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCC 2961 | || | || ||| ||||| | ||||||| || |||||||||| Sbjct 1821499 TTA--AAGGCCAC----------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCC 1821546 Query 2962 CCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGC 3021 | |||| || | ||||| ||| || |||| ||||||| || | ||||| |||| Sbjct 1821547 C-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGC 1821605 Query 3022 GACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACA 3081 | |||||||||||| ||||||| ||| || ||| | ||| |||| | ||||||| Sbjct 1821606 GGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACA 1821665 Query 3082 TCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCA 3141 | || || |||||||||| | || | |||||| ||||| || ||||||||||| || Sbjct 1821666 TACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACAT 1821725 Query 3142 GCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCC 3201 ||||||||| | ||| | || ||||||||||| || || | || |||| Sbjct 1821726 CAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGCCA 1821785 Query 3202 ACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTAC 3260 | |||| ||| ||||| | || || | || || || ||| | || |||||| | ||| Sbjct 1821786 CCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTAC 1821844 Score = 150 bits (166), Expect = 5e-33 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271 ||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || | Sbjct 1819733 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 1819792 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 | |||| || | ||| || || ||||| | |||||||| |||||||||||||| |||| Sbjct 1819793 TTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCA 1819852 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391 |||| || || || ||||||||||| ||||||||||| || |||||||| || | | Sbjct 1819853 ATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAAAATTG 1819912 Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGG 1419 | | ||| || || |||||| | || || Sbjct 1819913 TAGTGTCTGCTAAAGCCATTTTGGGTGG 1819940 Score = 98.7 bits (108), Expect = 3e-17 Identities = 192/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016 ||| | || || ||||| || || ||||| || |||||| |||| || ||||| || || Sbjct 1822670 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 1822729 Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076 || ||| ||||| |||||||| |||||||| || || ||| ||| || Sbjct 1822730 CCTCATCCTAACATGGGAGGCTTTGGGTACAAACATCCACCTCCAATGATTCTGCAGAAA 1822789 Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCT 4133 || || || || ||||| || ||||| | |||||| | || || | || ||| Sbjct 1822790 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCT 1822846 Query 4134 TTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAA- 4192 || || | || || ||| || ||||| | ||||||||||| |||||| |||| Sbjct 1822847 TTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAG----AGAAA 1822902 Query 4193 ---GGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACAC 4231 ||| |||||| ||||||| || |||||||| | ||| Sbjct 1822903 ATCAGAATCCAGCAAATGCTGGAATCCAGAGATCCAATTCAC 1822944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13940915346110