Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 214 5e-52
>seq14187
Length=3355950
Score = 214 bits (236), Expect = 5e-52
Identities = 265/360 (74%), Gaps = 2/360 (1%)
Strand=Plus/Plus
Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277
|||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| |||
Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787
Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337
||||||||||| ||||| ||| || ||||| || | |||||||| || |||||||||||
Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847
Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397
||||| ||||| || || |||||| | || |||||||| || || || |||||| ||
Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAA 1819907
Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456
| || | | |||||||| ||| |||| || || ||| | || || |||||||
Sbjct 1819908 AATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAAT 1819967
Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516
| |||| ||| || | || ||||| | ||| || ||||||||||||| | | | ||
Sbjct 1819968 GTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGT 1820027
Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576
|| || | || ||||||| ||||| | || |||||| | || |||||||| ||||
Sbjct 1820028 GTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA-AGGA 1820086
Score = 104 bits (114), Expect = 7e-19
Identities = 307/470 (65%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984
||||| |||||||||||| | ||||| ||||||| | || ||| || || ||
Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 1821449
Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044
|| |||| ||||| | ||| ||| ||||| | | ||||||| ||| |||| |
Sbjct 1821450 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGCCA- 1821508
Query 3045 GGAGGAACCGACCCCAACAATAAATTCT--TTGGATT-CAGCACCCCCTGGGGGTACTTT 3101
|| | |||||| || |||| || ||||||||| |||| ||| |
Sbjct 1821509 --------CGCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTC 1821559
Query 3102 GACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAAC 3161
|||| |||| || |||| ||||||| ||| ||||||| || || ||||||||||||
Sbjct 1821560 GACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAAC 1821619
Query 3162 AACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAA 3221
|||||||||||| ||| || || | | | | | || ||||| || ||||| ||
Sbjct 1821620 TACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAG 1821679
Query 3222 GTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTC 3281
|||| | || || | || || ||||| ||||| || || |||| |
Sbjct 1821680 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACATCAACCATCCAGATT 1821739
Query 3282 TTTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTTC 3341
||||| || | ||||||||||| || || | ||| || || ||||| |||
Sbjct 1821740 TTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTG 1821799
Query 3342 CCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCAC 3391
|| | || || | ||| | | | | | || ||||| | ||||||||
Sbjct 1821800 CCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 1821849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14865404684115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |