Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq14187 214 5e-52 >seq14187 Length=3355950 Score = 214 bits (236), Expect = 5e-52 Identities = 265/360 (74%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| ||| Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||| ||||| ||| || ||||| || | |||||||| || ||||||||||| Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847 Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| || || |||||| | || |||||||| || || || |||||| || Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAA 1819907 Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | || | | |||||||| ||| |||| || || ||| | || || ||||||| Sbjct 1819908 AATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAAT 1819967 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| | ||| || ||||||||||||| | | | || Sbjct 1819968 GTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGT 1820027 Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || || | || ||||||| ||||| | || |||||| | || |||||||| |||| Sbjct 1820028 GTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA-AGGA 1820086 Score = 104 bits (114), Expect = 7e-19 Identities = 307/470 (65%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984 ||||| |||||||||||| | ||||| ||||||| | || ||| || || || Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 1821449 Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044 || |||| ||||| | ||| ||| ||||| | | ||||||| ||| |||| | Sbjct 1821450 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGCCA- 1821508 Query 3045 GGAGGAACCGACCCCAACAATAAATTCT--TTGGATT-CAGCACCCCCTGGGGGTACTTT 3101 || | |||||| || |||| || ||||||||| |||| ||| | Sbjct 1821509 --------CGCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTC 1821559 Query 3102 GACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAAC 3161 |||| |||| || |||| ||||||| ||| ||||||| || || |||||||||||| Sbjct 1821560 GACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAAC 1821619 Query 3162 AACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAA 3221 |||||||||||| ||| || || | | | | | || ||||| || ||||| || Sbjct 1821620 TACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAG 1821679 Query 3222 GTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTC 3281 |||| | || || | || || ||||| ||||| || || |||| | Sbjct 1821680 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACATCAACCATCCAGATT 1821739 Query 3282 TTTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTTC 3341 ||||| || | ||||||||||| || || | ||| || || ||||| ||| Sbjct 1821740 TTTGCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTG 1821799 Query 3342 CCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCAC 3391 || | || || | ||| | | | | | || ||||| | |||||||| Sbjct 1821800 CCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 1821849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14865404684115