Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq14187 174 4e-40 >seq14187 Length=3355950 Score = 174 bits (192), Expect = 4e-40 Identities = 238/322 (74%), Gaps = 9/322 (3%) Strand=Plus/Plus Query 2836 TACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTT 2895 ||||| ||||||||||| ||| ||| ||| |||| ||||| || |||| ||||||| Sbjct 1821528 TACTTGGGTTACAGCACCCCT-GGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGG 1821586 Query 2896 TCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTC 2955 |||| | ||||| |||||||||||||||||| |||||||||||| || || ||||| Sbjct 1821587 AGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAA--GGCTC 1821644 Query 2956 -CA-CTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGA 3013 || | || | |||||||| || || |||||||||| | | | | ||||| | || Sbjct 1821645 ACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 1821704 Query 3014 CCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGCGGA-CACGGAGTACCAGCTC 3072 | || ||||| ||||| || ||||| ||| | ||||| || || | |||||||| Sbjct 1821705 CAATTGCCAATAACCTAACATCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTG 1821763 Query 3073 CCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTGCC-GCCGTTCCCGGCGGACGTCTT 3131 || || ||| | || || ||| |||||| ||| |||| || ||||||| || || || Sbjct 1821764 CCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGG-TGATGTTTT 1821822 Query 3132 CATGCTGCCGCAGTACGCGTAC 3153 ||| |||| |||||| |||| Sbjct 1821823 TATGTTGCCTCAGTACTGGTAC 1821844 Score = 116 bits (128), Expect = 1e-22 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212 |||| ||||| || ||||| ||| | | || || || ||| ||||||| | | ||| || Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787 Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272 ||| || || | | ||| || || ||||| | |||||||| || |||||||| || Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847 Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||||| ||||| || || |||||| | || ||||||||||| || |||||||| Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 1819901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13598630366295