Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq14187 105 2e-19 >seq14187 Length=3355950 Score = 105 bits (116), Expect = 2e-19 Identities = 322/492 (65%), Gaps = 23/492 (5%) Strand=Plus/Plus Query 2713 GAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCAC 2772 |||| | ||| || | |||| ||| |||||||| | ||| | ||||||| || | | | Sbjct 1821377 GAGGCATTGGATAGT-CCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTC 1821434 Query 2773 GTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTCG 2832 |||| || || || ||||||||||| | |||| || | || |||||||| | Sbjct 1821435 GTCACCACTCGTTCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAG 1821494 Query 2833 CCCATCAACTTTGATGGAACCACAGGGAACGGAACC--CAAG-CCGCTTACTGCGGATAC 2889 | || || ||| ||| || || | |||| |||| || ||| Sbjct 1821495 CAGATTAA---------------AGGCCACGCCTCCAACATGTCCGCCTACTTGGGTTAC 1821539 Query 2890 GCTACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGAC 2949 ||||| ||||||||| | ||||| ||| || |||| ||||||| ||| ||||| Sbjct 1821540 AGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGAC 1821598 Query 2950 TGGCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTG 3009 || || | ||||| |||||| | || || | |||| | | || | |||| | Sbjct 1821599 TGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATT 1821658 Query 3010 TTCAACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAAT 3069 |||||||| || || ||||| ||| | || || || || || ||||| || Sbjct 1821659 TTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAAC 1821718 Query 3070 CTCACCAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGG 3128 || || ||| | ||| | ||||| || || | ||||||| || || || | || Sbjct 1821719 CTAACATCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGCCATATGTGGTTGG 1821777 Query 3129 AAATGCCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTA 3188 ||||||||| |||| || ||| | ||||| | ||| || ||| |||||||||||| Sbjct 1821778 AAATGCCACCGAGGGGTGCTTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 1821837 Query 3189 CGGCTACTGTAC 3200 | | ||||| || Sbjct 1821838 CTGGTACTGCAC 1821849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14571103579975