Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq87054 410 4e-111 >seq87054 Length=8607 Score = 410 bits (454), Expect = 4e-111 Identities = 528/723 (73%), Gaps = 19/723 (3%) Strand=Plus/Minus Query 2809 ATGGCTACAGGCAGTGGCGCACCAATGGCAGACAATAACGAGGGCGCCGACGGAGTGGGT 2868 |||||| ||||| ||||||| ||||||| ||||| | | || ||||| ||| | ||| Sbjct 7231 ATGGCTTCAGGCGGTGGCGCGCCAATGGGCAACAATCAACAAGGTGCCGATGGAATCGGT 7172 Query 2869 AATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCATCACCACC 2928 |||||||||||||||||||||||||||||| ||||||| |||| |||| ||||| Sbjct 7171 AATTCCTCGGGAAATTGGCATTGCGATTCCCTTTGGATGGACGACCGAGTGCTCACCCGA 7112 Query 2929 AGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAGC 2988 | |||| ||||||||| || |||| |||||||||||| ||||| || | Sbjct 7111 ACCACCAGAACCTGGGTGCTCCCCAGCTACAACAACCATCTCTATAA-----------GG 7063 Query 2989 CAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3048 | |||| ||| ||||| || | | ||||| ||||||||||| ||||| || ||| Sbjct 7062 CGATCAAC-GCCGGCAACGAAAACAAGTGGTTTGGATACAGCACCCCCTGGGGATACTTT 7004 Query 3049 GACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAAC 3108 ||||||||| |||||||||||||||| | || || |||||||| ||||||||||||| Sbjct 7003 GACTTCAACCGATTCCACTGCCACTTCCCGCCCCGAGACTGGCAGCAACTCATCAACAAC 6944 Query 3109 AACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAG 3168 | |||||| |||||||| | | |||||||||||| ||||| |||| ||| ||| Sbjct 6943 TAT---GGATTCAGACCCAAGTGGATGCACTTCAAGCTCTCCAACATCCAAGCCAAGGAG 6887 Query 3169 GTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTG 3228 |||||| | | ||| || || || || ||||||||||| |||||| |||| | ||| Sbjct 6886 GTCACGACGCAGGACAGTGTCACAACCATCGCCAATAACCTCACCAGCTCGGTGCCGGTC 6827 Query 3229 TTTACTGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGC-CT 3287 ||| ||| |||| || | || || ||||| || ||| ||||| ||||| | || Sbjct 6826 TTTGTGGACACGGACTATAATCTACCCTACGTGCTAGGCAACGCGCA-CAAGGGCACGCT 6768 Query 3288 CCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACAA 3347 || || ||||| |||||| | || | | || ||||| || |||||||| || ||| | Sbjct 6767 GCCACCCTTCCCGGCAGACATGTTTCAGCTACCGCAGTACGGCTACCTCACACTCAACGA 6708 Query 3348 CGGGAGTCAG-GCAGTAGGACGCTCTTCATTTTACTGCCTGGAGTACTTTCCTTCTCAGA 3406 | | | ||| || | | || | || |||||| | |||||||| || |||| Sbjct 6707 CAGCA-ACAGCGCCATCCGGCGGGGGGCCTTCTACTGCTTTGAGTACTTCCCGAGCCAGA 6649 Query 3407 TGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTTTCCACA 3466 |||| | ||||| ||||||||| ||| |||| ||||||||||| || |||||| Sbjct 6648 TGCTCAGGACCGGCAACAACTTTGAGTTCGTCTACGAGTTTGAGGACGTGCCCTTCCACT 6589 Query 3467 GCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACCAGTACC 3526 |||||| ||| || || | || ||||||||||||||||| |||||||||| Sbjct 6588 CGAGCTACATGCACTCTCAATTGCTCTATCGACTCATGAATCCTCTCATGGACCAGTACC 6529 Query 3527 TGT 3529 ||| Sbjct 6528 TGT 6526 Score = 215 bits (238), Expect = 2e-52 Identities = 224/291 (77%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 2332 GGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGAGAG 2391 |||||||| |||| ||||| ||||||||||||||||||||||| || || || || || Sbjct 7723 GGTCTTGTCCTTCTGGGGTATAAGTACCTCGGACCCTTCAACGGCCTTGATAAAGGCCAG 7664 Query 2392 CCGGTCAAC-GAGGCAGACGCCGCGGCCCTCGAGCACGACAAAGCCTACGACCGGCAGCT 2450 || || ||| ||| || |||||| || |||||||| | || ||| | |||| ||| Sbjct 7663 CCCGTGAACAGAGCCA-ACGCCGTCACCAAGGAGCACGATGAGGCTTACAATCGGCTGCT 7605 Query 2451 CGACAGCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACGCGGAGTTTCAGGAGCG 2510 || ||||||||||| || || ||||||||||| ||||| ||||||||||| || ||| Sbjct 7604 TGAGAGCGGAGACAATCCATATCTCAAGTACAATCACGCGGACGCGGAGTTCCAAGAGAA 7545 Query 2511 CCTTAAAGAAGATACGTCTTTTGGGGGCAACCTCGGACGAGCAGTCTTCCAGGCGAAAAA 2570 || ||||||| | || || || | ||||||| ||||||||| ||||| || || Sbjct 7544 GCTCCAAGAAGACTCCAGCTTCGGAGGGACCCTCGGAAAAGCAGTCTTTCAGGCCAAGAA 7485 Query 2571 GAGGGTTCTTGAACCTCTGGGCCTGGTTGAGGAACCTGTTAAGACGGCTCC 2621 |||||||| |||||| | | |||| ||| | ||||||||||||||||| Sbjct 7484 AAGGGTTCTCGAACCTTTTGATTTGGTCGAGAAGCCTGTTAAGACGGCTCC 7434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14829450585120