Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq87054 338 2e-89 seq137177 91.5 4e-15 >seq87054 Length=8607 Score = 338 bits (374), Expect = 2e-89 Identities = 513/728 (70%), Gaps = 25/728 (3%) Strand=Plus/Minus Query 2874 ATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAGGC--CAGGGTGCCGATGGAGTGG 2931 |||||| ||| ||||||| ||| ||||| | || | || |||||||||||| | | Sbjct 7231 ATGGCTTCAGGCGGTGGCGCGCCAATGGGCAA--CAATCAACAAGGTGCCGATGGAATCG 7174 Query 2932 GCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTC 2991 | |||||||| |||||||||||||||||||||| ||| |||| || |||| |||| | Sbjct 7173 GTAATTCCTCGGGAAATTGGCATTGCGATTCCCTTTGGATGGACGACCGAGTGCTCACCC 7114 Query 2992 GAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAG 3051 |||||||| |||||||||| | ||||||||||||||||| || || || ||| | | Sbjct 7113 GAACCACCAGAACCTGGGTGCTCCCCAGCTACAACAACCATCTCTATAAGGCGATCAACG 7054 Query 3052 GACCCAGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACT 3111 || || | | | ||||||| |||||||||||||||||||| Sbjct 7053 CCGGCAACGAAAACAAG------------TGGTTTGGATACAGCACCCCCTGGGGATACT 7006 Query 3112 TTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACA 3171 |||||| ||| ||||||||||||||||| | || ||||||||||| | ||||||||| Sbjct 7005 TTGACTTCAACCGATTCCACTGCCACTTCCCGCCCCGAGACTGGCAGCAACTCATCAA-- 6948 Query 3172 ACAACTGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAG 3231 ||||| || || | ||||| ||||| ||| | |||| |||||||| | || | Sbjct 6947 -CAACTATGGATTCAGACCCAAGTGGATGCACTTCAAGCTCTCCAACATCCAAGCCAAGG 6889 Query 3232 AGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGG 3291 |||||||| || ||| ||| ||||||| ||| ||||||||||| |||| | || Sbjct 6888 AGGTCACGACGCAGGACAGTGTCACAACCATCGCCAATAACCTCACCAGCTCGGTGCCGG 6829 Query 3292 TCTTTGCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCT 3351 |||||| ||||| |||||| | || || ||||| || || || | | ||||| Sbjct 6828 TCTTTGTGGACACGGACTATAATCTACCCTACGTGCTAGGCAACGCGCACAAGGGCACGC 6769 Query 3352 TCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCACGCTAAACT 3411 | || || ||||| || || || | | | ||||||||||| ||| ||| || ||| Sbjct 6768 TGCCACCCTTCCCGGCAGACATGTTTCAGCTACCGCAGTACGGCTACCTCACACTCAACG 6709 Query 3412 ACAACAACGAGGCGGTGGATCGTTCGGCCTTCTACTGTCTGGACTACTTTCCCTCAGACA 3471 ||| |||| || | || |||||||||||| | || ||||| || | | Sbjct 6708 ACAGCAACAGCGCCATCCGGCGGGGGGCCTTCTACTGCTTTGAGTACTTCCCGAGCCAGA 6649 Query 3472 TGCTGCGGACAGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCCTTTCCA-- 3529 |||| |||| || || ||||||||||| ||| || |||||||| || ||||| Sbjct 6648 TGCTCAGGACCGGCAACAACTTTGAGTTCGTCTACGAGTTTGAGGACGTGCCCTTCCACT 6589 Query 3530 -TAGCATGTTTGCCCACAACCAGACGCTAGACCGGCTGATGAATCCCCTCGTGGATCAGT 3588 ||| | || ||| || ||| | || || |||||||| ||| |||| |||| Sbjct 6588 CGAGC-TACATG--CACTCTCAATTGCTCTATCGACTCATGAATCCTCTCATGGACCAGT 6532 Query 3589 ACCTCTGG 3596 |||| ||| Sbjct 6531 ACCTGTGG 6524 Score = 87.8 bits (96), Expect = 5e-14 Identities = 188/276 (68%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 2421 GGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAGAACCCGTCAAC-GAGGC 2479 || || || || || || || |||||||| || |||||||| | ||||| ||| ||| | Sbjct 7708 GGGTATAAGTACCTCGGACCCTTCAACGGCCTTGATAAAGGCCAGCCCGTGAACAGAGCC 7649 Query 2480 AGACGCTGCCGCCTTAGAACACGACAAGGCTTACGACCTCGAAATCAAGGACGGGCACAA 2539 | |||| | | || || ||||| |||||||| | | | || ||| |||| Sbjct 7648 A-ACGCCGTCACCAAGGAGCACGATGAGGCTTACAATCGGCTGCTTGAGAGCGGAGACAA 7590 Query 2540 CCCGTACTTTGAGTACAACGAGGCCGACAGACGTTTCCAGGAACGTCTCAAAGACGATAC 2599 || || | ||||||| | || ||| ||||| || ||| |||| || | Sbjct 7589 TCCATATCTCAAGTACAATCACGCGGACGCGGAGTTCCAAGAGAAGCTCCAAGAAGACTC 7530 Query 2600 CTCCTTTGGAGGCAATTTAGGTAAAGCCATCTTCCAGGCCAAAAAGAGGGTTCTCGAACC 2659 | ||| ||||| | | || ||||| |||| |||||||| || |||||||||||||| Sbjct 7529 CAGCTTCGGAGGGACCCTCGGAAAAGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAACC 7470 Query 2660 CTTTGGTCTGGT--GGAAGACT-CAAAGACGGCTCC 2692 |||| | |||| |||| || ||||||||||| Sbjct 7469 TTTTGATTTGGTCGAGAAGCCTGTTAAGACGGCTCC 7434 >seq137177 Length=6214 Score = 91.5 bits (100), Expect = 4e-15 Identities = 133/191 (70%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 2980 GAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACA 3039 ||||| |||| |||||| | ||||| |||| |||||||||||||| |||||||||||| Sbjct 189 GAGTCCTCACCAGAACCAACGGAACCCGGGTGCTGCCCAGCTACAACCACCACCTGTACA 130 Query 3040 AACGAATCCAAGGACC--CAGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCAC 3097 | ||| | ||| || | | | || ||| |||||| Sbjct 129 AGGCCATCGAC--ACCGGCAACTCCATCAATGAGCACAACAAGTGGTTCAGATACAGCAC 72 Query 3098 CCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCA 3157 ||||| ||| ||| ||||| ||| |||| |||||||||||||| || ||| |||||| Sbjct 71 ACCCTGAGGACACTGTGACTTCAACCGATGTCACTGCCACTTTTCACCAAGAGGCTGGCA 12 Query 3158 ACGACTCATCA 3168 |||||||||| Sbjct 11 GCGACTCATCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14877349327320