Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq87054 286 1e-73 >seq87054 Length=8607 Score = 286 bits (316), Expect = 1e-73 Identities = 482/688 (70%), Gaps = 21/688 (3%) Strand=Plus/Minus Query 2848 ACAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGGTC 2907 |||||||||||| ||| | |||||| |||| || ||||||||||||||||| |||| Sbjct 7193 ACAAGGTGCCGATGGAATCGGTAATTCCTCGGGAAATTGGCATTGCGATTCCCTTTGGAT 7134 Query 2908 AGAGAGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCA 2967 || || || |||| | ||| | |||||||| || || | |||||||||||| Sbjct 7133 GGACGACCGAGTGCTCACCCGAACCACCAGAACCTGGGTGCTCCCCAGCTACAACAACCA 7074 Query 2968 CCTGTACCTGCGGCTCGGCTCGAGCAACGCCAGCGACACCTTCAACGGATTCTCCACCCC 3027 || || | | || | | |||||| | | | || |||| | |||||| Sbjct 7073 TCTCTATAAGGCGATCAACGCCGGCAACGAAAACAAGTGGTTT---GGATACAGCACCCC 7017 Query 3028 CTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCAAAG 3087 |||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||| Sbjct 7016 CTGGGGATACTTTGACTTCAACCGATTCCACTGCCACTTCCCGCCCCGAGACTGGCAGCA 6957 Query 3088 GCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCATCTTCAACAT 3147 |||||||||| ||| ||| | | ||||| | ||||| || ||| |||||| Sbjct 6956 ACTCATCAACA---ACTATGGATTCAGACCCAAGTGGATGCACTTCAAGCTCTCCAACAT 6900 Query 3148 CCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGACGACCGTATCCAACAACCTCACCAG 3207 ||||| ||||||||||||||| || | | || ||| | |||| ||||||||||| Sbjct 6899 CCAAGCCAAGGAGGTCACGACGCAGGACAGTGTCACAACCATCGCCAATAACCTCACCAG 6840 Query 3208 CACGGTCCAGATCTTTGCGGACA-GCACGTACGAGCTCCCGTACGTGATGGATGCA--GG 3264 | |||| | | |||||| ||||| | || || | || || |||||| | | ||| | Sbjct 6839 CTCGGTGCCGGTCTTTGTGGACACGGAC-TATAATCTACCCTACGTGCT--AGGCAACGC 6783 Query 3265 TCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACGGGTA 3324 || |||||| |||| || ||||| ||| |||| | | || |||||||| || Sbjct 6782 GCACAAGGGCACGCTGCCACCCTTCCCGGCAGACATGTTTCAGCTACCGCAGTACGGCTA 6723 Query 3325 CTGCGGACTGGTAACCGGAGGCAGCTCTCAAAACCAGACAGACAGAAATGCCTTCTACTG 3384 | | ||| ||| | |||| || ||| | | | ||||||||||| Sbjct 6722 CCTCACACT--CAAC----GACAGC-AACAGCGCCATCCGG--CGGGGGGCCTTCTACTG 6672 Query 3385 TCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTTTGAGATGGTGTACAA 3444 | |||||||| || ||||||||||| || ||||| |||||||||||| | || ||| | Sbjct 6671 CTTTGAGTACTTCCCGAGCCAGATGCTCAGGACCGGCAACAACTTTGAGTTCGTCTACGA 6612 Query 3445 GTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCCTGGATAGGCTGAT 3504 |||||| |||||||||||||||| | ||| ||| || || || | || || Sbjct 6611 GTTTGAGGACGTGCCCTTCCACTCGAGCTACATGCACTCTCAATTGCTCTATCGACTCAT 6552 Query 3505 GAACCCGCTGCTGGACCAGTACCTGTGG 3532 ||| || || ||||||||||||||||| Sbjct 6551 GAATCCTCTCATGGACCAGTACCTGTGG 6524 Score = 196 bits (216), Expect = 1e-46 Identities = 318/458 (69%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 2175 TTGATGACTGTAATAAAGAGCAGTAAATAAAGTGAGTAGTCATGTCTTTTGTTGACCACC 2234 |||| || || ||||||||||||||||| | ||||||||||||| |||||||| |||| Sbjct 7890 TTGACGATTGCAATAAAGAGCAGTAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACC 7831 Query 2235 CTCCAGATTGGTTGGAATCGATCGGCGACGGCTTTCGTGAATTTCTCGGCCTTGAGGCGG 2294 |||||||||| | | | || | |||| || ||| ||| ||| | | | Sbjct 7830 CTCCAGATTGCCTCAAGAAGCTCAGATACGGTCCAGCCGAGTTTATCGACCTCAAACCCG 7771 Query 2295 GTCCCCCGAAACCCAAGGCCAATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTC 2354 | | || || || | || ||||| ||||||||||| | | || |||||||| |||| Sbjct 7770 GCCGGCCAAAGCCGAGAGCGAATCAGCAGAAGCAAGACTCCTCACGTGGTCTTGTCCTTC 7711 Query 2355 CTGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTG 2414 ||||| ||||| || || || |||||||||||||| ||| | || || || | Sbjct 7710 TGGGGTATAAGTACCTCGGACCCTTCAACGGCCTTGATAAAGGCCAGCCCGTGAACAGAG 7651 Query 2415 CTGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATA 2474 | ||| || || |||||||| | ||| | | ||||||| || || | Sbjct 7650 CCAACGCCGTCACCAAGGAGCACGATGAGGCTTACAATCGGCTGCTTGAGAGCGGAGACA 7591 Query 2475 ACCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACA 2534 | || || ||||||||||| ||||||||||| ||||| || ||||| ||| ||| Sbjct 7590 ATCCATATCTCAAGTACAATCACGCGGACGCGGAGTTCCAAGAGAAGCTCCAAGAAGACT 7531 Query 2535 CTTCTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAAC 2594 | || || || | ||| || || || || || ||||| || || ||| ||||||||| Sbjct 7530 CCAGCTTCGGAGGGACCCTCGGAAAAGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAAC 7471 Query 2595 CTCTTGGCCTGGTTGAGACGCCGGATAAAACGGCGCCT 2632 || ||| |||| |||| ||| | ||| ||||| ||| Sbjct 7470 CTTTTGATTTGGTCGAGAAGCCTGTTAAGACGGCTCCT 7433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14874156077840