Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq87054 379 6e-102 seq137177 95.1 4e-16 >seq87054 Length=8607 Score = 379 bits (420), Expect = 6e-102 Identities = 488/674 (72%), Gaps = 24/674 (4%) Strand=Plus/Minus Query 2782 AATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATAACCAAGGTGCCGATGGAGTGGG 2841 |||| || | || ||||||| ||| ||||| ||||| | ||||||||||||||| | || Sbjct 7232 AATGGCTTCAGGCGGTGGCGCGCCAATGGGCAACAATCAACAAGGTGCCGATGGAATCGG 7173 Query 2842 CAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGACAGAGTCGTCACCAA 2901 ||| |||||||| ||||||||||||||||| ||||||| ||| |||| ||||| Sbjct 7172 TAATTCCTCGGGAAATTGGCATTGCGATTCCCTTTGGATGGACGACCGAGTGCTCACCCG 7113 Query 2902 GTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACCGAGAGATCAAAAG 2961 ||||| ||||||||||||| ||||||||||||||||| | || | |||||| Sbjct 7112 AACCACCAGAACCTGGGTGCTCCCCAGCTACAACAACCATCTCTATAAGGCGATCAA--- 7056 Query 2962 CGGCTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCACCCCCTGGGGGTA 3021 || ||| ||||| ||| | ||||||||||||||||||||||| || Sbjct 7055 ---------CGCCGG---CAACGAAAACAAGTGGTTTGGATACAGCACCCCCTGGGGATA 7008 Query 3022 CTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATCAA 3081 ||||||||| ||||| |||||| |||||| |||||||||||||| ||||||||| Sbjct 7007 CTTTGACTTCAACCGATTCCACTGCCACTTCCCGCCCCGAGACTGGCAGCAACTCATCAA 6948 Query 3082 CAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAA 3141 |||||| || ||||||||| || | |||| ||| |||||| |||| ||| Sbjct 6947 CAACTA---TGGATTCAGACCCAAGTGGATGCACTTCAAGCTCTCCAACATCCAAGCCAA 6891 Query 3142 AGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCAACAACCTCACCTCCACCGTCCA 3201 ||||||||| ||||||| ||| |||||||| ||||||||| | | || | Sbjct 6890 GGAGGTCACGACGCAGGACAGTGTCACAACCATCGCCAATAACCTCACCAGCTCGGTGCC 6831 Query 3202 AGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGTCGGCAACGGGACCGAGGGATG 3261 || ||| |||| ||||| | || |||||||| | ||||||| | | |||| Sbjct 6830 GGTCTTTGTGGACACGGACTATAATCTACCCTACGTGCTAGGCAACGCGCACAAGGGCAC 6771 Query 3262 CCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTGAA 3321 ||||| ||||||| | | | ||| ||| ||||||||||| ||| || || || Sbjct 6770 GCTGCCACCCTTCCCGGCAGACATGTTTCAGCTACCGCAGTACGGCTACCTCACACTCAA 6711 Query 3322 CCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTTCC 3381 ||||| || | | ||| | | || | ||||| |||| | |||||||| || Sbjct 6710 ---CGACAGCA---ACAGCGCCATCCGGCGGGGGGCCTTCTACTGCTTTGAGTACTTCCC 6657 Query 3382 CAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTGCC 3441 ||| ||||||| || || ||||||||||||||||| |||| | |||||||| ||||| Sbjct 6656 GAGCCAGATGCTCAGGACCGGCAACAACTTTGAGTTCGTCTACGAGTTTGAGGACGTGCC 6597 Query 3442 CTTCCACTCCAGCT 3455 ||||||||| |||| Sbjct 6596 CTTCCACTCGAGCT 6583 Score = 307 bits (340), Expect = 3e-80 Identities = 345/459 (75%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 2166 TTGACGATGCCAATAAAGAACAGTAAATAAAGCGAGTAGTCATGTCTTTTGTTGATCACC 2225 |||||||| ||||||||| |||||||| | |||||||||||||| ||||||||||||| Sbjct 7890 TTGACGATTGCAATAAAGAGCAGTAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACC 7831 Query 2226 CTCCAGATTGGTTGGAAGAAGTTG-GTGAAGGTCTTCGCGAGTTTTTGGGCCTTGAAGCG 2284 |||||||||| | |||||| | | | |||| ||||||| | | ||| || | Sbjct 7830 CTCCAGATTGCCTC-AAGAAGCTCAGATACGGTCCAGCCGAGTTTATCGACCTCAAACCC 7772 Query 2285 GGCCCACCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTG 2344 |||| || || || | | | ||||||||| | ||||| | ||||||||||| || Sbjct 7771 GGCCGGCCAAAGCCGAGAGCGAATCAGCAGAAGCAAGACTCCTCACGTGGTCTTGTCCTT 7712 Query 2345 CCTGGTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGG 2404 | || ||||| || ||||||||| ||||| || ||| ||| |||| || ||||| Sbjct 7711 CTGGGGTATAAGTACCTCGGACCCTTCAACGGCCTTGATAAAGGCCAGCCCGTGAACAGA 7652 Query 2405 GCAGACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGAC 2464 || ||| ||| | |||||||| | ||||| || ||||||| |||||| Sbjct 7651 GCCAACGCCGTCACCAAGGAGCACGATGAGGCTTACAATCGGCTGCTTGAGAGCGGAGAC 7592 Query 2465 AACCCCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGAC 2524 || || || ||||||||||| ||||||||||| ||||| || ||||||||| || ||| Sbjct 7591 AATCCATATCTCAAGTACAATCACGCGGACGCGGAGTTCCAAGAGAAGCTCCAAGAAGAC 7532 Query 2525 ACATCCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAA 2584 | |||||| || | ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 7531 TCCAGCTTCGGAGGGACCCTCGGAAAAGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAA 7472 Query 2585 CCTTTTGGCCTGGTTGAAGAGGGTGCTAAGACGGCCCCT 2623 ||||||| |||| || || || ||||||||| ||| Sbjct 7471 CCTTTTGATTTGGTCGAGAAGCCTGTTAAGACGGCTCCT 7433 >seq137177 Length=6214 Score = 95.1 bits (104), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 2889 GAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACC 2948 ||||| |||||| ||| | ||||| |||||||||||||||||||| |||||| |||| Sbjct 189 GAGTCCTCACCAGAACCAACGGAACCCGGGTGCTGCCCAGCTACAACCACCACCTGTACA 130 Query 2949 GAGAGATCAAAAGCGG---CTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACA 3005 | ||| | | ||| |||| || | | |||| |||| | || |||||| Sbjct 129 AGGCCATCGACACCGGCAACTCCATCAATG--AGCA----CAACAAGTGGTTCAGATACA 76 Query 3006 GCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACT 3065 |||| ||||| || ||| |||||| ||||| | ||| |||||| || ||| || Sbjct 75 GCACACCCTGAGGACACTGTGACTTCAACCGATGTCACTGCCACTTTTCACCAAGAGGCT 16 Query 3066 GGCAAAGACTCATCA 3080 |||| ||||||||| Sbjct 15 GGCAGCGACTCATCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14711300354360