Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq18467 291 2e-75 >seq18467 Length=3096793 Score = 291 bits (322), Expect = 2e-75 Identities = 466/657 (71%), Gaps = 13/657 (2%) Strand=Plus/Plus Query 1194 GACATTTCCAGCAATCGGATTTATAAAATTTTGGAACTAAACGGGTACGATCCCCAATAT 1253 |||||| | |||| |||| || ||||| || |||||||| || || ||||| |||| Sbjct 747282 GACATTAAGACCAATTGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATAT 747341 Query 1254 GCGGCTTCCGT-CTTTCTGGGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTG 1312 || | || || | ||| | | || |||||||| || || || ||||| ||||| Sbjct 747342 GCTGGAAGGGTGCTGTATGGCTGGTGTCAA-AAAAAGTTTGGAAAAAGAAACACTATCTG 747400 Query 1313 GCTGTTTGGGCCT---GCAACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACAC 1369 | ||||||| ||| |||||| |||| ||||| ||||| || || ||||| | | Sbjct 747401 GGTGTTTGGTCCTAATGCAACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGT 747460 Query 1370 TGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGT 1429 ||| | || || || || || | ||| ||||||| |||||||| ||||| ||||| | Sbjct 747461 TGTTCTGTTTTATGGATGTGTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCAT 747520 Query 1430 CGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGC 1489 | |||||||| | ||||||||||| || || || ||||| |||||||| || |||| || Sbjct 747521 CAACAAGATGATCATCTGGTGGGAAGAAGGAAAAATGACTGCCAAGGTTGTC-AGTCTGC 747579 Query 1490 CAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCA 1549 || |||||||||| ||||| || | | ||||| || |||||||||| || Sbjct 747580 AAAGGCCATTCTCGATGGAAGTCCTGTTTGTATAGACCA-AAGGGCAAGTCCTCTCAACA 747638 Query 1550 GATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGG 1609 || || | ||| || || | || || || || || ||||| | | || || || || Sbjct 747639 GACTGATCTGACACCAGTAACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGG 747698 Query 1610 GAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAATTTGAACT 1669 || |||| || |||||||| || ||||| ||| |||| | || |||||||||||||| Sbjct 747699 AAATTCAATAACATTCGAACATCAACAGCCATTGGAAGATCAAATATTCAAATTTGAACT 747758 Query 1670 CACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAAGCAGGAAGTCAAAGACTTTTT 1729 || ||| || |||||||||||| ||||| |||| || || ||||||| || || Sbjct 747759 TGCCTGCCAACTCGATCATGACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTT 747818 Query 1730 CCGGTGGGCAAAGGATCACGTG-GT-TGAGGTGGAGCATGAATTCTACGTCAAAAAGGGT 1787 |||||||||| | ||| || ||| || || ||| || | || |||||||| Sbjct 747819 TGCCTGGGCAAAGG--CCAGTGAGTGTGATGTCACGCGTGAGTTTAATGT-TAAAAGGGT 747875 Query 1788 GGA-GCCAAGAAAAGACCCGCCCCCAGTGACGCAGATATAAGTGAGCCCAAACGGGT 1843 ||| || ||||||||| ||||||| || | ||||||| ||| ||||| || Sbjct 747876 GGAGGCTAAGAAAAGATCCGCCCCTTCTGCAGAGAATATAAGCCTGCCAAAACGCGT 747932 Score = 291 bits (322), Expect = 2e-75 Identities = 401/560 (72%), Gaps = 22/560 (4%) Strand=Plus/Plus Query 2795 TGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAATGGCAGACAATAACGAGGGCG 2854 ||||| ||| ||| |||||| |||| ||||| ||||||| |||||| |||| Sbjct 748849 TGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATATGCAGGGTT 748908 Query 2855 CCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACA 2914 |||| |||||||| | |||||||||||||||||||||||||||||||||| | || |||| Sbjct 748909 CCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTTGGTGACA 748968 Query 2915 GAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2974 |||||||||| | ||| | |||||||||||||| ||||||||||||||||| |||| Sbjct 748969 GAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCTACAACAACCACCTGTACA 749028 Query 2975 AACAAATTTCCAGCCAATCAGGAGC--CTCGAA----CGACAATCACTACTTTGGCTACA 3028 | |||| || | | || ||||| || ||| |||||| || |||| | | || Sbjct 749029 AGAAAAT---CAACAACTCTGGAGCGACTGGAAACAGCGACAACCAGTACTACAGATTCA 749085 Query 3029 GCACCCCTTGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACT 3088 ||| || ||||| || || ||||||| | ||||| |||||||||| | | |||| Sbjct 749086 GCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATGGCCACTTTTCCCTTCAAGACT 749145 Query 3089 GGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCT 3148 ||||| |||||||| | |||||||| |||| || || || |||| ||||| | Sbjct 749146 GGCAACATCTCATCAATAGCAACTGGG------GACCAAAAAGGCTTGACTTGAAGCTTT 749199 Query 3149 TTAACATTCAAGTCAAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACC 3208 | ||||||||||||||||| |||| ||||| || || | ||||| | Sbjct 749200 TCAACATTCAAGTCAAAGAAGTCATAACACATGACAACAC-------ATCACTAATAATC 749252 Query 3209 TTACCAGCACGGTTCAGGTGTTTACTGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCT 3268 | || ||||| | |||||||| | ||||| || | ||||| | ||| | || Sbjct 749253 TCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTGTCAGCTACGGTATGCAGCGGGGA 749312 Query 3269 CGGCGCATCAAGGATGCCTCCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATG 3328 || || ||||| || || | ||| ||||||| | ||||||| | |||| ||| Sbjct 749313 ATGCACACGAAGGAACGCTGCCTCTGTTTCCAGCAGGTCTATTCATGGCTCTACAGCATG 749372 Query 3329 GATACCTCACCCTGAACAAC 3348 |||| || || || |||||| Sbjct 749373 GATATCTAACTCTCAACAAC 749392 Score = 91.5 bits (100), Expect = 4e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 4038 CCTTC-AGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACATTTTCACCCCTCTC 4096 ||||| |||| || || || | || | ||| ||||| || ||||||||||| ||||| | Sbjct 750330 CCTTCCAGGGACCGATTGGGTCTAAAAATCCTCACACAGATGGACATTTTCATCCCTCAC 750389 Query 4097 CCCTCATGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCTCATCAAGAACACCC 4156 | || | || |||||| ||| ||| | || || || || ||||| || || || || | Sbjct 750390 CGCTGACGGATGGATTTGGATGGAAATATCC-CCGCCTCAAATTCTAATGAAAAATACTC 750448 Query 4157 CGGTACCTGCGAATCCTTCGACCACCTTCAGTGCGGCAAAGTTTGCTTCCTTCATCACAC 4216 ||| ||||| | |||| | || || |||| | ||| | | |||| | | Sbjct 750449 TGGTTCCTGCAAGTCCTCCAACAACGTTCACCACCAGCAAGACCAACCCGTGCATCTCTC 750508 Query 4217 AGTACTCCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGA 4268 |||| ||||| ||||| || | || || ||||| |||||||| || || || Sbjct 750509 AGTATTCCACAGGACAAGTGACGGTTGAAATCGAATGGGAGCTTCAAAAAGA 750560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14844258466740