Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq18467 178 4e-41 >seq18467 Length=3096793 Score = 178 bits (196), Expect = 4e-41 Identities = 271/381 (71%), Gaps = 15/381 (4%) Strand=Plus/Plus Query 3032 AATGGCAGAGGGAGGAGGCGGAGCTATGGGCGAC--TCTTCAGGGGGTGCCGATGGAGTG 3089 |||||| | || || ||| | | |||||| || | | ||||| | ||||||||||| Sbjct 748862 AATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATATGCAGGG--TTCCGATGGAGTG 748919 Query 3090 GGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACA 3149 || | | |||||||||||||||||||||||||| |||| | || ||| |||||||||| Sbjct 748920 GGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTTGGTGACAGAGTCATCACA 748979 Query 3150 AAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATTACC 3209 || | ||| | ||||||| |||||||| ||||||||||||| | ||||| ||| | | Sbjct 748980 AAATCTACCGGTACCTGGGCCCTGCCAACCTACAACAACCACCTGTACAAGAAAATCAAC 749039 Query 3210 AGC---GGAACCTCTCAAGATGCAAATGTCCAGTA-TGCAGGATACAGTACCCCCTGGGG 3265 | | ||| | || | | | |||||| | || ||| ||| | || ||||| Sbjct 749040 AACTCTGGAGCGACTGGAAACAGCGACAACCAGTACTACA-GATTCAGCATCCTGTGGGG 749098 Query 3266 GTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTAT 3325 ||||| || |||| || ||||| ||||||| |||| | ||||||||| || || Sbjct 749099 ATACTTGGACTTCAGTCGGTTCCATGGCCACTTTTCCCTTCAAGACTGGCAACATCTCAT 749158 Query 3326 CAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAGT 3385 ||| | | | |||| |||| || ||| | || ||| | ||||| | ||||| Sbjct 749159 CAATAGCAACTGGG------GACCAAAAAGGCTTGACTTGAAGCTTTTCAACATTCAAGT 749212 Query 3386 CAAAGAAGTCACAACGCAGGA 3406 ||||||||||| ||| || || Sbjct 749213 CAAAGAAGTCATAACACATGA 749233 Score = 127 bits (140), Expect = 7e-26 Identities = 179/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 1479 GGAAGTATCCTGTGCGGCTGG-GTGAAGAGAGAGTTCAACAAAAGAAACGCCATATGGCT 1537 ||||| | |||| |||||| || || | | |||| ||||||||| | || ||| | Sbjct 747345 GGAAGGGTGCTGTATGGCTGGTGTCAAAAAA-AGTTTGGAAAAAGAAACACTATCTGGGT 747403 Query 1538 CTACGGACCT---GCCACCACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGT 1594 | || ||| || || |||| ||||| |||||||||||||| || | ||| ||| Sbjct 747404 GTTTGGTCCTAATGCAACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGT 747463 Query 1595 ACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGA 1654 | || ||||| |||||| | ||| | ||||| |||||||| || ||||| || | | Sbjct 747464 TCTGTTTTATGGATGTGTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCATCAA 747523 Query 1655 TAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAA 1714 || ||| | || |||||||| || |||||||||||| ||||||| | | |||||||| Sbjct 747524 CAAGATGATCATCTGGTGGGAAGAAGGAAAAATGACTGCCAAGGTTG-TCAGTCTGCAAA 747582 Query 1715 AGCAATT 1721 || ||| Sbjct 747583 GGCCATT 747589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16209137529035