Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq18467 172 2e-39 >seq18467 Length=3096793 Score = 172 bits (190), Expect = 2e-39 Identities = 371/545 (68%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 1323 GGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCG---GCC 1379 |||||| ||||| ||||| || || || ||||| |||||| | ||||| || || Sbjct 747360 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 747419 Query 1380 ACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGC 1439 || | || || || ||||| || ||||||||| | | | || | || || || || Sbjct 747420 ACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 747479 Query 1440 GTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGG 1499 || | ||| ||||||| |||||||| ||||| || ||| || |||||||| | |||||| Sbjct 747480 GTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCATCAACAAGATGATCATCTGG 747539 Query 1500 TGGGAGGAGGGCAAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGA 1559 ||||| || || || ||||| |||||||| || || || |||||||| || | ||| Sbjct 747540 TGGGAAGAAGGAAAAATGACTGCCAAGGTTGT-CAGTCTGCAAAGGCCATTCTCGATGGA 747598 Query 1560 AGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTG 1619 || || | | |||| |||| ||||||| || |||| || | || || || Sbjct 747599 AGTCCTGTTTGTATAGACC-AAAGGGCAAGTCCTCTCAACAGACTGATCTGACACCAGTA 747657 Query 1620 ATCGTCACCTCCAACACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAG 1679 | || || || || || ||||| | | ||||| || ||||| || | || ||||| Sbjct 747658 ACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 747717 Query 1680 CACCAACAACCACTCCAGGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCAC 1739 || ||||| ||| | | || | || ||||| || || || || | || || || Sbjct 747718 CATCAACAGCCATTGGAAGATCAAATATTCAAATTTGAACTTGCCTGCCAACTCGATCAT 747777 Query 1740 GACTTTGGCAAGGTCACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCAC 1799 |||||| | ||| |||| || || ||||||| || || ||||| || || Sbjct 747778 GACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGGC-AAAGGCCA- 747835 Query 1800 GTGA--CCGAGGTGACTCACGAGTTTTACGTCAGAAAGGGTGGA-GCTAGAAAGAGGCCC 1856 |||| || || || | |||||| | || | |||||||||| |||| || || || Sbjct 747836 GTGAGTGTGATGTCACGCGTGAGTTTAATGTTA-AAAGGGTGGAGGCTAAGAAAAGATCC 747894 Query 1857 GCCCC 1861 ||||| Sbjct 747895 GCCCC 747899 Score = 140 bits (154), Expect = 1e-29 Identities = 196/273 (72%), Gaps = 14/273 (5%) Strand=Plus/Plus Query 2887 CAAGGTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCT 2946 || ||| ||||||||||||| | | ||||||| ||||||||||||||||||| ||| | Sbjct 748902 CAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTT 748961 Query 2947 GAGGGCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCAC 3006 | | | |||| || | ||| | ||||||| | |||| ||||||||||||||| Sbjct 748962 GGTGACAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCTACAACAACCAC 749021 Query 3007 CTCTACAAG--------CGACTCGGAGAGAGCCTG----CAG-TCCAACACCTACAACGG 3053 || |||||| | |||| | ||| | ||| ||| |||| ||| || | Sbjct 749022 CTGTACAAGAAAATCAACAACTCTG-GAGCGACTGGAAACAGCGACAACCAGTACTACAG 749080 Query 3054 ATTCTCCACCCCCTGGGGATACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACG 3113 |||| || || ||||||||||| ||||||| || ||||| ||||||| || | | Sbjct 749081 ATTCAGCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATGGCCACTTTTCCCTTCA 749140 Query 3114 TGACTGGCAGCGACTCATCAACAACAACTGGGG 3146 |||||||| | |||||||| | ||||||||| Sbjct 749141 AGACTGGCAACATCTCATCAATAGCAACTGGGG 749173 Score = 123 bits (136), Expect = 8e-25 Identities = 197/278 (71%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 4050 GGGAGCCGTGCCTGGAATGGTCTGGCAAAA-CAG--AG-ACATTTACTACCAGGGTCCCA 4105 ||||| ||| || |||||||| ||| | | || || ||| || || |||||| || | Sbjct 750285 GGGAGTCGTTCCGGGAATGGTGTGGTGAGATCATGAAGTACACTTCCTTCCAGGGACCGA 750344 Query 4106 TTTGGGCCAAGATTCCTCATACCGATGGACACTTTCACCCCTCACCGCTGATTGGTGGGT 4165 || || | || | |||||| || |||||||| ||||| ||||||||||||| | ||| | Sbjct 750345 TTGGGTCTAAAAATCCTCACACAGATGGACATTTTCATCCCTCACCGCTGACGGATGGAT 750404 Query 4166 TTGGGCTGAAACACCCGCCTCCTCAAATTTTTATCAAGAACACCCCGGTACCTGCGAATC 4225 |||| |||| | || || ||||||||| | || || || || | ||| ||||| | || Sbjct 750405 TTGGATGGAAATATCC-CCGCCTCAAATTCTAATGAAAAATACTCTGGTTCCTGCAAGTC 750463 Query 4226 CTGCAACGACCTTCAGCTCTACTCCGGTAAACTCCTTCATTACTCAGTACAGCACTGGCC 4285 || |||| || |||| | | | | ||| | | ||| ||||||| ||| || | Sbjct 750464 CTCCAACAACGTTCACCACCAGCAAGACCAACCCGTGCATCTCTCAGTATTCCACAGGAC 750523 Query 4286 AGGTGTCGGTGCAGATTGACTGGGAGATCCAGAAGGAG 4323 | ||| |||| | || || |||||| | || || ||| Sbjct 750524 AAGTGACGGTTGAAATCGAATGGGAGCTTCAAAAAGAG 750561 Score = 89.7 bits (98), Expect = 2e-14 Identities = 200/297 (67%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 2344 CCTAAACCCAAGGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGGGT 2403 || || || || || ||||||||| |||| |||||| | | || | ||| |||| || Sbjct 748360 CCAAAGCCAAAAGCTAATCAACAA-ATCAAGACAACACCAGAGGGCCTGTTGTTCCTGGA 748418 Query 2404 TACAAATACCTCGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGAC 2463 |||||||| | ||| | || || || | || || || | || ||| | | ||| Sbjct 748419 TACAAATATTTTGGATCACTTAATGGTCTAGGTAAAGGAGAGCTAGTTAACAGAACAGAC 748478 Query 2464 GCGGCAGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCC 2523 ||| ||| ||||| |||||||| || | || | || || ||||| | || Sbjct 748479 ACGGTTGCCAAAGAGCATGACAAGGCATATAATCAACTCCTTAATAGTGGTGATTATCCA 748538 Query 2524 TACCTCAAGTACAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACATCG 2583 | || | ||||||||||| || || ||||| ||| || |||| | || |||||| Sbjct 748539 CATCTAACATACAACCACGCGGATGCTGAGTTTCAGAAGAAGCTTGCTGACG--ACATCG 748596 Query 2584 TTTGGGGGCAACCTCGG-CAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACC 2639 | || || ||||| || | || || |||||||||||||| ||||| ||||| Sbjct 748597 CTAGGTGGAAACCTTGGAAAAAGTTGTTTTCCAGGCCAAAAAACAGGTTCCCGAACC 748653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15125545018220