Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq18467 199 1e-47 >seq18467 Length=3096793 Score = 199 bits (220), Expect = 1e-47 Identities = 318/458 (69%), Gaps = 22/458 (5%) Strand=Plus/Plus Query 2851 CCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAG 2910 |||| | | ||||||| || ||||||| ||| |||||| ||||| ||||| | Sbjct 748840 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATA 748899 Query 2911 GCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGC 2970 |||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 748900 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 748959 Query 2971 TGGAAAACGGAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACC 3030 | | || ||||| |||| | | ||| | ||||||| | |||| | ||||||||||| Sbjct 748960 TTGGTGACAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCTACAACAACC 749019 Query 3031 ACCTGTACAAACGAATC--CAA----GGACCCAGCGGAGGCNNNNNNNNNNNNNNATTCT 3084 |||||||||| |||| ||| ||| | | ||| | | || Sbjct 749020 ACCTGTACAAGAAAATCAACAACTCTGGAGCGACTGGAAACAGCGACAACCAG---TACT 749076 Query 3085 TTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCC 3144 ||||||||| || ||||||||||| |||| || ||| ||||| |||||||||||| Sbjct 749077 ACAGATTCAGCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATGGCCACTTTTCCC 749136 Query 3145 CGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCGCT 3204 | ||||||||||| |||||||| | |||||||| | || ||| | | || Sbjct 749137 TTCAAGACTGGCAACATCTCATCAATAGCAACTGGG------GACCAAAAAGGCTTGACT 749190 Query 3205 TTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCG 3264 | | || || ||||| || || ||||| |||| || || ||||| |||| Sbjct 749191 TGAAGCTTTTCAACATTCAAGTCAAAGAAGTCATAACACATGA---CAACA----CATCA 749243 Query 3265 GCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGAC 3302 || || ||||| || || ||||||| || |||||| Sbjct 749244 CTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGAC 749281 Score = 140 bits (154), Expect = 1e-29 Identities = 261/380 (69%), Gaps = 5/380 (1%) Strand=Plus/Plus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGAC---ATGCG 1251 || ||||| || || || | || || ||||||| | ||| |||| || | |||| Sbjct 747360 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 747419 Query 1252 ACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGC 1311 || |||| ||||| ||||| || || || || | ||| ||| | ||| |||||||| Sbjct 747420 ACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 747479 Query 1312 GTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGG 1371 ||| | ||| |||| || |||||||| ||||| |||||| || | || ||||| |||||| Sbjct 747480 GTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCATCAACAAGATGATCATCTGG 747539 Query 1372 TGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGA 1431 ||||| || || |||||||| ||||| || || | | || ||||| ||||| | ||| Sbjct 747540 TGGGAAGAAGGAAAAATGACTGCCAAGGTTGT-CAGTCTGCAAAGGCCATTCTCGATGGA 747598 Query 1432 TCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTC 1491 || || | | |||| ||| |||| | || | || || | ||| || || Sbjct 747599 AGTCCTGTTTGTATAGACC-AAAGGGCAAGTCCTCTCAACAGACTGATCTGACACCAGTA 747657 Query 1492 ATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAG 1551 | | | || || || ||||| || |||||| || || || | | || ||||| Sbjct 747658 ACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 747717 Query 1552 CATAAGCAGCCGTTGGAGGA 1571 ||| | ||||| ||||| || Sbjct 747718 CATCAACAGCCATTGGAAGA 747737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14892205038015