Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq18467 141 3e-30 >seq18467 Length=3096793 Score = 141 bits (156), Expect = 3e-30 Identities = 279/409 (68%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 2209 AGTAGTCATGTCTTTTGTTGACCACCCTCCAGATTGGTTGGAATCGATCGGCGACGGCTT 2268 ||||||||||||| |||||| || ||||||| ||||||| || | | ||| | | Sbjct 748269 AGTAGTCATGTCTCTTGTTGCTCATCCTCCAGCTTGGTTGAAAAAGGTTGGCTGTGCACT 748328 Query 2269 TCGTGAATTTCTCGGCCTTGAGGCGGGTCCCCCGAAACCCAAGGCCAATCAACAGAAGCA 2328 | ||| ||| | |||||||| | || || || || || || |||||||| || || Sbjct 748329 TGCTGAGTTTTTTTATCTTGAGGCAAGACCTCCAAAGCCAAAAGCTAATCAACA-AATCA 748387 Query 2329 AGATAACGCTCGAGGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCT 2388 ||| ||| | |||| | ||| ||||||| ||||| ||| |||| | || || || Sbjct 748388 AGACAACACCAGAGGGCCTGTTGTTCCTGGATACAAATATTTTGGATCACTTAATGGTCT 748447 Query 2389 TGATAAGGGCGATCCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTA 2448 | ||| || || | || || | ||| ||||||| |||||| ||| | || Sbjct 748448 AGGTAAAGGAGAGCTAGTTAACAGAACAGACACGGTTGCCAAAGAGCATGACAAGGCATA 748507 Query 2449 CCAGAAACAGCTTGAGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGA 2508 | ||| ||| | || ||| | || | || | |||||||||||||| || || Sbjct 748508 TAATCAACTCCTTAATAGTGGTGATTATCCACATCTAACATACAACCACGCGGATGCTGA 748567 Query 2509 GTTTCAGGAGAAACTCGCTTCTGACACTTCTTTTGGGGGAAACCTTGG-GAAGGCTGTTT 2567 ||||||| |||| || ||| |||| || | || ||||||||||| || | ||||| Sbjct 748568 GTTTCAGAAGAAGCTTGCTGACGACA--TCGCTAGGTGGAAACCTTGGAAAAAGTTGTTT 748625 Query 2568 TCCAGGCTAAAAAGAGGATTCTCGAACCTCTTGGCCTGGTTGAGACGCC 2616 ||||||| ||||| | ||| |||||| || ||||| || | ||| Sbjct 748626 TCCAGGCCAAAAAACAGGTTCCCGAACCCTGTGCGCTGGTAGAAAAGCC 748674 Score = 141 bits (156), Expect = 3e-30 Identities = 305/446 (68%), Gaps = 9/446 (2%) Strand=Plus/Plus Query 4022 CCGGGAATGGTGTGG-CAGGACA-GA--GACATTTACTACCAAGGGCCCATTTGGGCCAA 4077 ||||||||||||||| || || || ||| || || ||| || || ||| || | || Sbjct 750295 CCGGGAATGGTGTGGTGAGATCATGAAGTACACTTCCTTCCAGGGACCGATTGGGTCTAA 750354 Query 4078 AATTCCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAA 4137 || ||| ||||| |||||||| ||||| || || || || | | ||||||||| || | Sbjct 750355 AAATCCTCACACAGATGGACATTTTCATCCCTCACCGCTGACGGATGGATTTGGA-TGGA 750413 Query 4138 AAGCCCGCCTCCACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGAC 4197 || | || || ||||| | || ||||| |||| || || || | ||| |||| || Sbjct 750414 AATATCCCCGCCTCAAATTCTAATGAAAAATACTCTGGTTCCTGCAAGTCCTCCAACAAC 750473 Query 4198 CTTC-TCTCCGGCCAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTG 4256 ||| | || || || | |||| | |||| | ||||| ||| ||||| ||| | | Sbjct 750474 GTTCACCACCAGCAAG-ACCAACCCGTGCATCTCTCAGTATTCCACAGGACAAGTGACGG 750532 Query 4257 TCAAAATAGAATGGGAAATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGT 4316 | |||| |||||||| | || || ||| |||| ||||||| ||||| || |||| Sbjct 750533 TTGAAATCGAATGGGAGCTTCAAAAAGAGTCATCCACGAGATGGGGTCCAGAAGTGCAGT 750592 Query 4317 TCACGTCCAACTACGGAGCACAGGACTCGC-TTCTCTGGGCTCCCGACAACGCCGGAGCC 4375 ||| | |||| || | ||| | | ||| | ||| || | || | |||| Sbjct 750593 CCACAGCAAACTTTGGCACTGAGGCTACACTTTCATTTGGC-CCAGGCAGCAATGGAGTG 750651 Query 4376 TACAAAGAGCCCAGGGCCATTGGATCCCGATACCTCACCAACCACCTCTAGCCCAATTCT 4435 | ||| ||||||| ||||| | | ||||||||| || ||||| ||||| | Sbjct 750652 TGTCCAGAATCCAGGGCGATTGGCACTCATTACCTCACCTGCCCGCTCTAACCCAACAAT 750711 Query 4436 GTTGCATACCCTCAATAAACCGTGTA 4461 ||| |||| | ||||||||| ||||| Sbjct 750712 GTTTCATATCATCAATAAACTGTGTA 750737 Score = 136 bits (150), Expect = 1e-28 Identities = 470/729 (64%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 1061 ATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCC 1120 ||||| || || || || ||||| || |||| ||||| || ||| || ||| | Sbjct 747117 ATCACCTCAGAAAAACAATGGATACAAGAGAGCCAGGAATCTTATCTGAGCTACAATGCA 747176 Query 1121 ACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGT 1180 || |||| || |||||||||||||| | || | || || || | || || | || | Sbjct 747177 ACTGGAATATCCAGGAGCCAGATTAAATCTGCTTTGGAGAATGCATGTAAGATGACGAAT 747236 Query 1181 CTGACCAAATCTGCCTCAGACTATCTCGTGGGACAG--ACTGTTCCAGAGGACATTTCTG 1238 ||||| | | | | || ||| | | || | |||| ||| | |||||| Sbjct 747237 CTGACAACAAC---CAGTGATTATTTGGCCGGTAATGAACTG--CCAAATGACATTAAGA 747291 Query 1239 AAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGGGCTCTG 1298 || | || | | || ||||| || || || || || || ||||| || || | Sbjct 747292 CCAATTGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATATGCTGGAAGGG 747351 Query 1299 TTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGAC 1358 | || || |||||||| |||||||| || ||||| ||||| ||| ||| | Sbjct 747352 TGCTGTATGGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTC 747411 Query 1359 CC---GCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTT 1415 | || || |||||||||| ||||| || ||||||||||| | || | |||| Sbjct 747412 CTAATGCAACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTT 747471 Query 1416 ATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGT 1475 |||| ||||| | ||| | ||||| ||||| | || ||| Sbjct 747472 ATGGATGTGTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCATCAACAAGATGA 747531 Query 1476 TGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCT 1535 | ||||||||||| || ||||| ||||| |||||| || | | || |||||||| Sbjct 747532 TCATCTGGTGGGAAGAAGGAAAAATGACTGCCAAGGTTGT-CAGTCTGCAAAGGCCATTC 747590 Query 1536 TgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCT- 1594 | | || | || | | || | ||| | || |||||| ||| || ||| Sbjct 747591 TCGATGGAAGTCCTGTTTGTATAGA-CCAAAGGGCAAGTCCTCTCAACAGACTGA-TCTG 747648 Query 1595 ACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACG 1654 || || || | | | || || |||||| ||||| |||| || ||||||| || || | Sbjct 747649 ACACCAGTAACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGGAAATTCAATA 747708 Query 1655 ACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGC--GGC 1712 || || ||||| || ||||| ||||||| | || |||| ||||||||| ||| | | Sbjct 747709 ACATTCGAACATCAACAGCCATTGGAAGATCAAATATTCAAATTTGAACT--TGCCTGCC 747766 Query 1713 GGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTTTGCTTGGG 1772 ||| | || ||| | ||||| || || || ||||||| || ||||| |||| Sbjct 747767 AACTCGATCATGACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGG 747826 Query 1773 CAAAGGTCA 1781 |||||| || Sbjct 747827 CAAAGGCCA 747835 Score = 131 bits (144), Expect = 5e-27 Identities = 197/279 (71%), Gaps = 22/279 (8%) Strand=Plus/Plus Query 2849 CAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCAC-----TT 2903 || ||| |||| |||||||| | | |||| || ||||||||||||||||||| || Sbjct 748902 CAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTT 748961 Query 2904 GGTCAGAGAGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACA 2963 ||| | |||| ||| ||| | || ||| | ||||||| |||||| |||||||||| Sbjct 748962 GGTGACAGAG-----TCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCTACAACA 749016 Query 2964 ACCACCTGTACCTG-----CGGCTCGGCTCGAGCAAC----GCCAGCGACACC---TTCA 3011 ||||||||||| | | | || |||| || |||||||| | | | Sbjct 749017 ACCACCTGTACAAGAAAATCAACAACTCTGGAGCGACTGGAAACAGCGACAACCAGTACT 749076 Query 3012 ACGGATTCTCCACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGC 3071 || ||||| || || ||||||||||| ||||| | || ||||| ||||||| || | Sbjct 749077 ACAGATTCAGCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATGGCCACTTTTCCC 749136 Query 3072 CAAGAGACTGGCAAAGGCTCATCAACAACCACTGGGGAC 3110 |||||||||| |||||||| | | ||||||||| Sbjct 749137 TTCAAGACTGGCAACATCTCATCAATAGCAACTGGGGAC 749175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14889008599930