Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq18467 282 1e-72 >seq18467 Length=3096793 Score = 282 bits (312), Expect = 1e-72 Identities = 409/577 (71%), Gaps = 19/577 (3%) Strand=Plus/Plus Query 2799 CAGCAGCGCCCTCTAGTGTGGGATCTGGTACAGTGGCTGCAGGCGGTGGCGCACCAATGG 2858 ||| || | |||| | | |||||||| ||||| |||||||||| |||||| ||||||| Sbjct 748831 CAGTAGTGTCCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGG 748890 Query 2859 CAGACAATAACGAAGGTGCCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATT 2918 |||||| | ||| |||| |||||||| | | |||| ||||||||||||||||||| Sbjct 748891 GCCACAATATGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATT 748950 Query 2919 CCACATGGCTGGGCGACAGAGTCATTACCACCAGCACCCGAACCTGGGCCCTGCCCACCT 2978 |||||||| | || ||||||||||| || | ||| | |||||||||||||| |||| Sbjct 748951 CCACATGGGTTGGTGACAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCT 749010 Query 2979 ACAACAACCACCTCTACAAGCAAATCTCCAGTGAAACTGCAG---GTAGTACCAACGACA 3035 ||||||||||||| |||||| ||||| || | ||| || | | | || ||||| Sbjct 749011 ACAACAACCACCTGTACAAGAAAATCAACA---ACTCTGGAGCGACTGGAAACAGCGACA 749067 Query 3036 ACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCC 3095 || |||| | | | ||||| || ||||| || || ||||| | | ||||| ||| Sbjct 749068 ACCAGTACTACAGATTCAGCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATGGCC 749127 Query 3096 ACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGA 3155 |||| || | | |||||||| | |||||||| | |||||||||| || || | Sbjct 749128 ACTTTTCCCTTCAAGACTGGCAACATCTCATCAATAGCAACTGGGGA------CCAAAAA 749181 Query 3156 AGCTGCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTA 3215 ||| || ||||| |||||||| || ||||| || |||| || ||||| | Sbjct 749182 GGCTTGACTTGAAGCTTTTCAACATTCAAGTCAAAGAAGTCATAACACATGACAAC---- 749237 Query 3216 CGACCATCGCTAATAACCTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGC 3275 |||| ||||||| || || ||||| || ||||| || ||||||| || | |||| Sbjct 749238 ---ACATCACTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTGTCAGC 749294 Query 3276 TGCCGTACGTCCTCGGCTCTGCGCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCT 3335 | | ||| | || ||| ||| | || ||||||| ||| || || | | | Sbjct 749295 TACGGTATGCAGCGGGGAATGCACACGAAGGAACGCTGCCTCTGTTTCCAGCAGGTCTAT 749354 Query 3336 TCATGATTCCTCAGTACGGCTACCTGACTCTCAACAA 3372 ||||| || ||| | || || || ||||||||||| Sbjct 749355 TCATGGCTCTACAGCATGGATATCTAACTCTCAACAA 749391 Score = 237 bits (262), Expect = 5e-59 Identities = 453/658 (69%), Gaps = 21/658 (3%) Strand=Plus/Plus Query 1207 GACATTAAAACCAACCGCATCTACCGCATCCTGGAGCTGAACGGGTACGATCCTGCCTAC 1266 |||||||| ||||| | || ||| || | || || || || || |||||||| || Sbjct 747282 GACATTAAGACCAATTGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATAT 747341 Query 1267 GCCGGCTCCGT-CTTTCTCGGCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTG 1325 || || || || | | |||||| || |||||||| || || | ||||| ||||| Sbjct 747342 GCTGGAAGGGTGCTGTAT-GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTG 747400 Query 1326 GCTGTTTGGGCCC---GCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGC 1382 | ||||||| || || || |||| ||||| |||||||| ||||||||| | | | Sbjct 747401 GGTGTTTGGTCCTAATGCAACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGT 747460 Query 1383 CGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGT 1442 || | || || || || || | ||| ||||||| |||||||| ||||| || ||| | Sbjct 747461 TGTTCTGTTTTATGGATGTGTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCAT 747520 Query 1443 CGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGC 1502 | |||||||| | ||||||||||| || || || ||||| |||||||| || |||| || Sbjct 747521 CAACAAGATGATCATCTGGTGGGAAGAAGGAAAAATGACTGCCAAGGTTGT-CAGTCTGC 747579 Query 1503 CAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCA 1562 ||||||||||||| || || || | | |||| |||| ||||||| || || Sbjct 747580 AAAGGCCATTCTCGATGGAAGTCCTGTTTGTATAGACC-AAAGGGCAAGTCCTCTCAACA 747638 Query 1563 GATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGG 1622 || || | || || || | || || || || || ||||| | | || || || || Sbjct 747639 GACTGATCTGACACCAGTAACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGG 747698 Query 1623 GAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACT 1682 || | || ||||| || || ||||| ||| | || | || |||||||||||||| Sbjct 747699 AAATTCAATAACATTCGAACATCAACAGCCATTGGAAGATCAAATATTCAAATTTGAACT 747758 Query 1683 CACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAAGCAGGAAGTCAAAGAGTTCTT 1742 || ||| || || || |||||| | ||| | || || || ||||||||||||| Sbjct 747759 TGCCTGCCAACTCGATCATGACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTT 747818 Query 1743 CCGCTG------GGCCAGTGATCACGTGACCGAGGTGGCGCATGAGTTCTACGTCAGAAA 1796 ||| ||||||||| ||| || || ||| |||||| | || | ||| Sbjct 747819 TGCCTGGGCAAAGGCCAGTGA----GTG--TGATGTCACGCGTGAGTTTAATGTTA-AAA 747871 Query 1797 GGGCGGA-GCCAGCAAAAGACCCGCCCCCGATGACGCGGATATAAGCGAGCCCAAGCG 1853 ||| ||| || | |||||| ||||||| || | | |||||||| ||| || || Sbjct 747872 GGGTGGAGGCTAAGAAAAGATCCGCCCCTTCTGCAGAGAATATAAGCCTGCCAAAACG 747929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14978508866310