Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq18467 306 1e-79 >seq18467 Length=3096793 Score = 306 bits (338), Expect = 1e-79 Identities = 418/581 (72%), Gaps = 22/581 (4%) Strand=Plus/Plus Query 2698 CAGCAGCGCCCTCTGGTGTGGGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGG 2757 ||| || | |||| | ||||| ||| ||||||||||||||| |||||| ||||||| Sbjct 748831 CAGTAGTGTCCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGG 748890 Query 2758 CAGACAATAACGAAGGCGCCGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATT 2817 |||||| | || |||| |||||||| | |||||||||||||||||||||||||| Sbjct 748891 GCCACAATATGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATT 748950 Query 2818 CCACATGGCTGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCT 2877 |||||||| | || |||||||||||||| | ||| | |||||||||||||| |||| Sbjct 748951 CCACATGGGTTGGTGACAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAACCT 749010 Query 2878 ACAACAACCACCTCTACAAGCAAATCTCCAACGGGACATCGGGAG-GA--GCCACCAACG 2934 ||||||||||||| |||||| ||||| |||| || |||| || | | || || Sbjct 749011 ACAACAACCACCTGTACAAGAAAATCAACAAC------TCTGGAGCGACTGGAAACAGCG 749064 Query 2935 ACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACT 2994 ||||| |||| | | | ||||| || ||||| || || ||||| | | ||||| Sbjct 749065 ACAACCAGTACTACAGATTCAGCATCCTGTGGGGATACTTGGACTTCAGTCGGTTCCATG 749124 Query 2995 GCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCA 3054 |||||||||| | | |||||||| | |||||||| | |||||||||| || | Sbjct 749125 GCCACTTTTCCCTTCAAGACTGGCAACATCTCATCAATAGCAACTGGGGA------CCAA 749178 Query 3055 AGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCA 3114 | || || ||| ||||| |||||||| || ||||| || |||| |||| || Sbjct 749179 AAAGGCTTGACTTGAAGCTTTTCAACATTCAAGTCAAAGAAGTCATAACACATGA---CA 749235 Query 3115 CCAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACC 3174 || |||| | ||||| ||||| ||||| ||||||||||| ||||||| || | | Sbjct 749236 ACA----CATCACTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTGTC 749291 Query 3175 AGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACG 3234 |||| | ||| | || ||| ||| | || ||||||| ||| || || | Sbjct 749292 AGCTACGGTATGCAGCGGGGAATGCACACGAAGGAACGCTGCCTCTGTTTCCAGCAGGTC 749351 Query 3235 TGTTCATGATTCCCCAGTACGGCTACCTAACACTCAACAAC 3275 | |||||| || ||| | || || ||||| ||||||||| Sbjct 749352 TATTCATGGCTCTACAGCATGGATATCTAACTCTCAACAAC 749392 Score = 219 bits (242), Expect = 1e-53 Identities = 382/549 (70%), Gaps = 19/549 (3%) Strand=Plus/Plus Query 1184 GGCTGGGCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCC---GCC 1240 |||||| ||| |||||||| || ||| | ||||| |||||| ||||||| || || Sbjct 747360 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 747419 Query 1241 ACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGC 1300 || |||| ||||| |||||||| ||||||||| | | | || | || || || || Sbjct 747420 ACTGCCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 747479 Query 1301 GTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGG 1360 || | ||| ||||||| |||||||| |||||||| ||| || |||||||| | |||||| Sbjct 747480 GTTTATTGGGCCAATGAAAACTTTCCATTCAATGACTGCATCAACAAGATGATCATCTGG 747539 Query 1361 TGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGC 1420 ||||| || || || ||||| |||||||| || |||| || ||||||||||||| || Sbjct 747540 TGGGAAGAAGGAAAAATGACTGCCAAGGTTGT-CAGTCTGCAAAGGCCATTCTCGATGGA 747598 Query 1421 AGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTG 1480 || || | | |||| |||| ||||||| || |||| || | || || || Sbjct 747599 AGTCCTGTTTGTATAGACC-AAAGGGCAAGTCCTCTCAACAGACTGATCTGACACCAGTA 747657 Query 1481 ATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAG 1540 | || || || || || ||||| | | || || || || || | || ||||| Sbjct 747658 ACTGTGACTTCAAATACTGACATGGGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 747717 Query 1541 CACCAGCAGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCAC 1600 || || ||||| | | || | || || || || ||||| || ||| || || || Sbjct 747718 CATCAACAGCCATTGGAAGATCAAATATTCAAATTTGAACTTGCCTGCCAACTCGATCAT 747777 Query 1601 GACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTG------GGCCAGT 1654 |||||| | ||| | ||||| || ||||||||||||| ||| ||||||| Sbjct 747778 GACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGGCAAAGGCCAGT 747837 Query 1655 GATCACGTGACCGAGGTGGCGCATGAGTTTTACGTCAGAAAGGGCGGA-GCCAGCAAAAG 1713 || ||| || || ||| ||||||| | || | |||||| ||| || | ||||| Sbjct 747838 GA----GTG--TGATGTCACGCGTGAGTTTAATGTTA-AAAGGGTGGAGGCTAAGAAAAG 747890 Query 1714 ACCCGCCCC 1722 | ||||||| Sbjct 747891 ATCCGCCCC 747899 Score = 96.9 bits (106), Expect = 1e-16 Identities = 257/386 (67%), Gaps = 15/386 (4%) Strand=Plus/Plus Query 3819 GAAATCAAAACCACTAACCCTGTGGC-TACA--GAGGAATACGGTATCGTGGCAGATAAC 3875 ||||| |||| | ||| || || || |||| || | |||| | || | || | ||| Sbjct 750181 GAAATACAAACAATTAATCCAGTTGCCTACAACGAAGGATACAGAATAG---CAAACAAC 750237 Query 3876 TTGCAGCAGCAAAACACGGCTCCTCAAATTGGAACTGTCAACAGCCAGGGGGCCTTACCC 3935 |||||||| || ||| | || | | | || |||||| |||||| | | | || Sbjct 750238 GTGCAGCAGACAAGCACAGGACCAACACTGGAAAACGTCAACCACCAGGGAGTCGTTCCG 750297 Query 3936 GGTATGGTCTGGCAGAACCGGGACGTGTACCTGC----AGGGTCCCATCTGGGCCAAGAT 3991 || ||||| ||| | | || || || | | |||| || || || | || | Sbjct 750298 GGAATGGTGTGGTGAGATCATGAAGTACACTTCCTTCCAGGGACCGATTGGGTCTAAAAA 750357 Query 3992 TCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACA 4051 ||||||||| || || | || || || || ||||||| || || ||||| |||| | Sbjct 750358 TCCTCACACAGATGGACATTTTCATCCCTCACCGCTGACGGATGGATTTGGATGGAAATA 750417 Query 4052 TCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCCGACCACCTT 4111 ||| |||||||| || || || || || || | || ||||| |||||| || || || Sbjct 750418 TCC-CCGCCTCAAATTCTAATGAAAAATACTCTGGTTCCTGCAAGTCCTCCAACAACGTT 750476 Query 4112 CA--ACCAGTCAAAGCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTG 4169 || ||||| | | | ||| | | |||| | || || ||| ||||| || | || Sbjct 750477 CACCACCAGCAAGACC--AACCCGTGCATCTCTCAGTATTCCACAGGACAAGTGACGGTT 750534 Query 4170 GAAATTGAATGGGAGCTGCAGAAGGA 4195 ||||| ||||||||||| || || || Sbjct 750535 GAAATCGAATGGGAGCTTCAAAAAGA 750560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13930077174430