Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq546 167 8e-38 >seq546 Length=548233 Score = 167 bits (184), Expect = 8e-38 Identities = 318/459 (69%), Gaps = 26/459 (6%) Strand=Plus/Minus Query 3032 AATGGCAGAGGGAGGAGGCGGAGCTATGGGCGAC--TCTTCAGGGGGTGCCGATGGAGTG 3089 |||||| | || || ||| | | |||||| || | | ||||| | ||||||||||| Sbjct 467396 AATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATGTGCAGGG--TTCCGATGGAGTG 467339 Query 3090 GGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACA 3149 || | | |||||||||||||||||||||||||| |||| |||| || |||||||||| Sbjct 467338 GGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTGGGTGTCAGAGTCATCACA 467279 Query 3150 AAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATTACC 3209 || | ||| | ||||||| |||||||| ||||||||||||| | | ||| ||| | | Sbjct 467278 AAATCTACCGGTACCTGGGCCCTGCCAA-CTACAACAACCACCTGTTCAAGAAAATCAAC 467220 Query 3210 AGC---GGAACCTCTCAAGATGCAA--ATGTCCAGTATGCAGGATACAGTACCCCCTGGG 3264 | | ||| | || || ||| | |||||| |||| | | | || |||| Sbjct 467219 AACTCTGGAGCAACT--GGAAACAATGACAACCAGTACTACGGATTCGGCATCCTGTGGG 467162 Query 3265 GGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTA 3324 | ||||| || ||||| || || || ||||||| |||| | ||||||||| || | Sbjct 467161 GATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCCTTCAAGACTGGCAACATCTCA 467103 Query 3325 TCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAG 3384 |||| | ||| |||| |||| || ||| | || ||| | ||||| | |||| Sbjct 467102 TCAATAGCCACTGGG------GACCAAAAAGGCTTGACTTGAAGCTTTTCAACATTCAAG 467049 Query 3385 TCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACAATCTCACCTCAACAA 3444 ||| |||||||| ||| || || || ||| ||| | || |||||||| |||| Sbjct 467048 TCAGAGAAGTCATAACACATGA-CA-ACA-----CATCACTAATAATCTCACAAGCACAA 466996 Query 3445 TTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATG 3483 | || || || |||| || |||| || | ||||| Sbjct 466995 TCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTATG 466957 Score = 129 bits (142), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 1518 AAAAGAAACGCCATATGGCTCTACGGACCT---GCCACCACCGGGAAGACCAACATTGCA 1574 ||||||||| | || ||| | | || ||| || || ||||| ||||| ||||||||| Sbjct 468885 AAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCAACTACCGGAAAGACAAACATTGCA 468826 Query 1575 GAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTT 1634 ||||| || | ||| ||| | || ||||| |||||||| ||||| ||||| |||||| Sbjct 468825 GAAGCCATCTCATATGTTGTTCTGTTTTATGGATGTGTTAATTGGACCAATGAAAACTTT 468766 Query 1635 CCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAAT 1694 || || ||||||| | | || ||| | || |||||||| || ||||||||||| Sbjct 468765 CCATTCAATGATTACATCAACAAGATGATCATCTGGTGGGAAGAAGGAAAAATGACGGCC 468706 Query 1695 AAGGTTGTTGAATCTGCAAAAGCAATT 1721 ||||||| | | |||||| | || ||| Sbjct 468705 AAGGTTG-TCAGTCTGCAGAGGCCATT 468680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16225131589810