Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq546 279 2e-71 >seq546 Length=548233 Score = 279 bits (308), Expect = 2e-71 Identities = 409/572 (72%), Gaps = 24/572 (4%) Strand=Plus/Minus Query 2792 CCACAAGTTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATA 2851 || ||| ||||||||||| |||||||||| |||| |||||| ||||||| ||||| Sbjct 467418 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATG 467359 Query 2852 ACGAGGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGC 2911 ||||| ||||||||||||| | |||||| ||||||||||||||||||||| |||| Sbjct 467358 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 467299 Query 2912 TGGGCGACAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCACTTACAACAACC 2971 |||| | |||||||||||| | ||| | |||||||||||||| || |||||||||| Sbjct 467298 TGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCCAAC-TACAACAACC 467240 Query 2972 ATCTCTACAAGCAAATCTCCAGCCAATCAGGAG---CTTCAAAC---GACAACCACTACT 3025 | || | |||| |||| || | | || |||| || |||| |||||||| |||| Sbjct 467239 ACCTGTTCAAGAAAAT---CAACAACTCTGGAGCAACTGGAAACAATGACAACCAGTACT 467183 Query 3026 TTGGCTACAGCACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCAC 3085 || | | ||| || ||||| || || ||||| || | || || ||||||| || | Sbjct 467182 ACGGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCC 467124 Query 3086 CACGTGACTGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACTCAGCT 3145 | |||||||| | ||||| || | | |||||||| || || | || || Sbjct 467123 TTCAAGACTGGCAACATCTCATCAATAGCCACTGGGGA------CCAAAAAGGCTTGACT 467070 Query 3146 TCAAGCTCTTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGACTATTG 3205 | ||||| |||||||| ||||| |||| |||| | || ||| || || || Sbjct 467069 TGAAGCTTTTCAACATTCAAGTCAGAGAAGTCA--TAACAC-ATGACAACAC----ATCA 467017 Query 3206 CCAATAACCTTACCAGCACGGTTCAAGTGTTTACGGACTCGGAGTATCAGCTCCCGTACG 3265 | ||||| || || ||||| | || ||||| ||||||| || |||||||| | ||| | Sbjct 467016 CTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTATG 466957 Query 3266 TGCTCGGGTCGGCGCACCAAGGCTGTCTCCCGCCGTTTCCAGCGGACGTCTTCATGGTCC 3325 ||| || ||| |||| || || ||||||||||| | || ||||||| | Sbjct 466956 CAGCGGGGAATGCACACGAAGGAACGCTGCCTCCGTTTCCAGCAGGTGTATTCATGGCTC 466897 Query 3326 CTCAGTATGGATACCTCACCCTGAACAACGGA 3357 | ||| ||||||| || || || |||||| || Sbjct 466896 CACAGCATGGATATCTAACTCTCAACAACAGA 466865 Score = 248 bits (274), Expect = 3e-62 Identities = 471/688 (68%), Gaps = 8/688 (1%) Strand=Plus/Minus Query 1023 ATCACGTCAGAAAAGCAATGGATTCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCC 1082 ||||| |||||||| |||||| | || ||| ||||| || || | || ||| || Sbjct 469153 ATCACCTCAGAAAAACAATGGCTACAAGAGAGCCAGGAATCTTATCTGAGCTACAATGCA 469094 Query 1083 GCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGC 1142 | | || || |||||| || | || |||| ||||| | ||||||||||| Sbjct 469093 ACTGGAATATCCAGGAGCCAGATTAAATCTGCTTTGGAGAATGCATGTAAGATCATGAGT 469034 Query 1143 CTGACAAAGACGGCTCCGGACTACCTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAA 1202 |||||||| | | || || ||| || | | | ||| | ||||||| | Sbjct 469033 CTGACAAACAA--CCAGTGATTATTTGGCCGGTAATGAACTGCCAAATGACATTAAGACC 468976 Query 1203 AATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCC-GCAGTACGCGGCCTCCGT 1261 |||||||| ||| |||| | || || || || || ||||| ||| || || | | Sbjct 468975 AATCGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCA-TATGCTGGAAGGGC 468917 Query 1262 CTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCC 1321 | |||||| ||||| ||||| || || || ||||| |||||| | ||||| || Sbjct 468916 GCTGGATGGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCC 468857 Query 1322 G---GCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTA 1378 || || || || || || ||||| || ||||||||| | | | || | || || Sbjct 468856 TAATGCAACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTA 468797 Query 1379 CGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGT 1438 || || || || ||||||||||| |||||||| ||||| |||| | || |||||||| | Sbjct 468796 TGGATGTGTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGAT 468737 Query 1439 GATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCT 1498 ||||||||||| || || || |||||||||||||| || || || |||||||||| Sbjct 468736 CATCTGGTGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCT 468678 Query 1499 GGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCAC 1558 | ||||| || | | ||||||||||||||||| || |||| || | || Sbjct 468677 CGATGGAAGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGAC 468618 Query 1559 TCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCAC 1618 || |||| || || || || || |||||||| | || || || || || | || Sbjct 468617 ACCAGTGACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAAC 468558 Query 1619 CTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTT 1678 ||||| ||||| ||||| || |||| | || || ||||||||||| || ||| | Sbjct 468557 ATTCGAACATCAACAGCCTTTGGAGGATCAAATATTCAAATTTGAACTTGCCTGCCAACT 468498 Query 1679 GGACCATGACTTTGGGAAGGTCACCAAA 1706 || ||||||||| ||||| |||| ||| Sbjct 468497 TGATCATGACTTTAGGAAGATCACAAAA 468470 Score = 190 bits (210), Expect = 6e-45 Identities = 246/334 (74%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 3949 GCAAATAACTTGCAGAGCTCAAATACAGCTCCCACGACTGGAACT-GTCAATCATCAGGG 4007 ||| | ||| ||||| ||| |||| || || ||||||| ||||| || ||||| Sbjct 466035 GCAGACAACGTGCAGCAGACAAGCACAGGACCAAC-ACTGGAAAACGTCAACCACCAGGG 465977 Query 4008 GGCCTTACCTGGCATGGTGTGGCAAGATCGTGACGTGTAC---CTTCAAGG-ACCTATCT 4063 | | | || || |||||||||| ||||| ||| || || |||| ||| ||| || | Sbjct 465976 AGTCGTTCCGGGAATGGTGTGGCGAGATCATGAAGTACACTTCCTTCCAGGGACCGATTT 465917 Query 4064 GGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTG 4123 || | || | ||||||||| |||||||| |||||||| || || |||| ||| || |||| Sbjct 465916 GGTCTAAAAGTCCTCACACAGATGGACATTTTCATCCCTCGCCACTGACGGGTGGATTTG 465857 Query 4124 GACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTC 4183 ||||||||||||| || ||||||| | || |||||||||||||| || |||||||||| Sbjct 465856 GACTGAAACATCC-CCGTCTCAAATTCTAATGAAAAATACTCCGGTTCCTGCAAATCCTC 465798 Query 4184 CGACGACTTTCAGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTCCACTGGACAGG 4243 | || || ||| | | |||| | | ||| ||||||| ||||| ||||| | Sbjct 465797 CAACAACGTTCGCCACCAGCAAGACCAACCCGTGCATCTCTCAGTATTCCACAGGACAAG 465738 Query 4244 TCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGA 4277 | | || ||||| || |||||||| || ||||| Sbjct 465737 TGACGGTTGAAATCGAATGGGAGCTTCAAAAAGA 465704 Score = 84.2 bits (92), Expect = 7e-13 Identities = 187/277 (68%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 2302 CCCAAAGCGAACCAACAACACCAGGACAACCGTCGGGGTCTTGTGCTTCCGGGTTACAAA 2361 || ||||| || |||||| | | |||||| | || | ||| |||| || |||||| Sbjct 467902 CCAAAAGCTAATCAACAA-ATTAAGACAACACCAGAGGGCCTGTTGTTCCTGGATACAAA 467844 Query 2362 TACCTCGGACCCGGTAACGGACTCGACAAAGGAGAGCCGGTCAACGAGGCGGACGCGGCA 2421 || | ||| | ||| || || | |||||||||| || ||| || ||| ||| Sbjct 467843 TATTTTGGATCATTTAATGGTCTAGGTAAAGGAGAGCTAGTTAACAGAGCAGACACGGTT 467784 Query 2422 GCCCTCGAACACGACAAAGCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTACCTC 2481 ||| || |||||||| || || | || | || || |||||| | || | || Sbjct 467783 GCCAAAGAGCACGACAAGGCATATAATCAACTCCTTAACAGCGGTGATTATCCACATCTA 467724 Query 2482 AAGTACAACCACGCCGACGCCGAGTTTCAGGAGCGTCTTCAAGAAGA-TACGTCTTTTGG 2540 | ||||||||||| || || ||||||||| || || ||| || || || | || Sbjct 467723 ACATACAACCACGCAGATGCTGAGTTTCAGAAGAAGCTCGCAGACGACAACATCGCTAGG 467664 Query 2541 GGGCAACCTTGG-CAGAGCAGTCTTCCAGGCCaaaaa 2576 || |||||||| | || || |||||||||||||| Sbjct 467663 TGGAAACCTTGGAAAAAGTTGTTTTCCAGGCCAAAAA 467627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15009286588010