Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14]
11,654 sequences; 2,034,575,300 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq546 187 7e-44
>seq546
Length=548233
Score = 187 bits (206), Expect = 7e-44
Identities = 329/478 (69%), Gaps = 24/478 (5%)
Strand=Plus/Minus
Query 2851 CCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAG 2910
|||| | | ||||||| || ||||||| ||| |||||| ||||| ||||| | |
Sbjct 467418 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATG 467359
Query 2911 GCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGC 2970
|||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 467358 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 467299
Query 2971 TGGAAAACGGAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACC 3030
||| | ||||| |||| | | ||| | ||||||| | || ||| |||||||||||
Sbjct 467298 TGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTG-CCAACTACAACAACC 467240
Query 3031 ACCTGTACAAACGAATC--CAA----GGACCCAGCGGAGGCNNNNNNNNNNNNNNATTCT 3084
|||||| ||| |||| ||| ||| | | ||| | | ||
Sbjct 467239 ACCTGTTCAAGAAAATCAACAACTCTGGAGCAACTGGAAACAATGACAACCAG---TACT 467183
Query 3085 TTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCC 3144
|||||| ||| || ||||||||||| |||| |||||| || || ||||||||||||
Sbjct 467182 ACGGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCC 467124
Query 3145 CGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCGCT 3204
| ||||||||||| |||||||| | | |||||| | || ||| | | ||
Sbjct 467123 TTCAAGACTGGCAACATCTCATCAATAGCCACTGGG------GACCAAAAAGGCTTGACT 467070
Query 3205 TTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCG 3264
| | || || ||||| || || | ||| |||| || || ||||| ||||
Sbjct 467069 TGAAGCTTTTCAACATTCAAGTCAGAGAAGTCATAACACATGA---CAACA----CATCA 467017
Query 3265 GCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTA 3322
|| || ||||| || || ||||||| || |||||| ||||| || || | |||
Sbjct 467016 CTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTA 466959
Score = 167 bits (184), Expect = 7e-38
Identities = 266/380 (70%), Gaps = 4/380 (1%)
Strand=Plus/Minus
Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGAC---ATGCG 1251
|| ||||| || || || | || || ||||||| | ||| |||| || | ||||
Sbjct 468909 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 468850
Query 1252 ACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGC 1311
|| ||||| ||||| ||||| || || || || | ||| ||| | ||| ||||||||
Sbjct 468849 ACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 468790
Query 1312 GTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGG 1371
||||| |||||||| || |||||||| ||||| || | | || | || ||||| ||||||
Sbjct 468789 GTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGATCATCTGG 468730
Query 1372 TGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGA 1431
||||| || || |||||||| ||||| || || | | || |||| ||||| | |||
Sbjct 468729 TGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCTCGATGGA 468671
Query 1432 TCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTC 1491
|| || | | |||||||| ||||| | || | || || | ||| || ||
Sbjct 468670 AGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACACCAGTG 468611
Query 1492 ATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAG 1551
| | | || || || ||||||||| |||||| || || || | | || |||||
Sbjct 468610 ACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 468551
Query 1552 CATAAGCAGCCGTTGGAGGA 1571
||| | ||||| ||||||||
Sbjct 468550 CATCAACAGCCTTTGGAGGA 468531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14906899640490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |