Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq546 187 7e-44 >seq546 Length=548233 Score = 187 bits (206), Expect = 7e-44 Identities = 329/478 (69%), Gaps = 24/478 (5%) Strand=Plus/Minus Query 2851 CCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAG 2910 |||| | | ||||||| || ||||||| ||| |||||| ||||| ||||| | | Sbjct 467418 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATG 467359 Query 2911 GCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGC 2970 |||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 467358 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 467299 Query 2971 TGGAAAACGGAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACC 3030 ||| | ||||| |||| | | ||| | ||||||| | || ||| ||||||||||| Sbjct 467298 TGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTG-CCAACTACAACAACC 467240 Query 3031 ACCTGTACAAACGAATC--CAA----GGACCCAGCGGAGGCNNNNNNNNNNNNNNATTCT 3084 |||||| ||| |||| ||| ||| | | ||| | | || Sbjct 467239 ACCTGTTCAAGAAAATCAACAACTCTGGAGCAACTGGAAACAATGACAACCAG---TACT 467183 Query 3085 TTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCC 3144 |||||| ||| || ||||||||||| |||| |||||| || || |||||||||||| Sbjct 467182 ACGGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCC 467124 Query 3145 CGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCGCT 3204 | ||||||||||| |||||||| | | |||||| | || ||| | | || Sbjct 467123 TTCAAGACTGGCAACATCTCATCAATAGCCACTGGG------GACCAAAAAGGCTTGACT 467070 Query 3205 TTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCG 3264 | | || || ||||| || || | ||| |||| || || ||||| |||| Sbjct 467069 TGAAGCTTTTCAACATTCAAGTCAGAGAAGTCATAACACATGA---CAACA----CATCA 467017 Query 3265 GCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTA 3322 || || ||||| || || ||||||| || |||||| ||||| || || | ||| Sbjct 467016 CTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTA 466959 Score = 167 bits (184), Expect = 7e-38 Identities = 266/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGAC---ATGCG 1251 || ||||| || || || | || || ||||||| | ||| |||| || | |||| Sbjct 468909 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 468850 Query 1252 ACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGC 1311 || ||||| ||||| ||||| || || || || | ||| ||| | ||| |||||||| Sbjct 468849 ACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 468790 Query 1312 GTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGG 1371 ||||| |||||||| || |||||||| ||||| || | | || | || ||||| |||||| Sbjct 468789 GTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGATCATCTGG 468730 Query 1372 TGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGA 1431 ||||| || || |||||||| ||||| || || | | || |||| ||||| | ||| Sbjct 468729 TGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCTCGATGGA 468671 Query 1432 TCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTC 1491 || || | | |||||||| ||||| | || | || || | ||| || || Sbjct 468670 AGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACACCAGTG 468611 Query 1492 ATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAG 1551 | | | || || || ||||||||| |||||| || || || | | || ||||| Sbjct 468610 ACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 468551 Query 1552 CATAAGCAGCCGTTGGAGGA 1571 ||| | ||||| |||||||| Sbjct 468550 CATCAACAGCCTTTGGAGGA 468531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14906899640490