Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq546 178 4e-41 >seq546 Length=548233 Score = 178 bits (196), Expect = 4e-41 Identities = 316/451 (70%), Gaps = 9/451 (2%) Strand=Plus/Minus Query 4022 CCGGGAATGGTGTGGCAGGA-CAG--AG-ACATTTACTACCAAGGGCCCATTTGGGCCAA 4077 |||||||||||||||| || || || ||| || || ||| || || |||||| | || Sbjct 465969 CCGGGAATGGTGTGGCGAGATCATGAAGTACACTTCCTTCCAGGGACCGATTTGGTCTAA 465910 Query 4078 AATTCCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAA 4137 || ||| ||||| |||||||| ||||| || || || || | || |||||||||||||| Sbjct 465909 AAGTCCTCACACAGATGGACATTTTCATCCCTCGCCACTGACGGGTGGATTTGGACTGAA 465850 Query 4138 AAGCCCGCCTCCACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGAC 4197 | || || | ||||| | || ||||| ||||| || || || ||||| |||| || Sbjct 465849 ACATCC-CCGTCTCAAATTCTAATGAAAAATACTCCGGTTCCTGCAAATCCTCCAACAAC 465791 Query 4198 CTTC-TCTCCGGCCAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTG 4256 ||| | || || || | |||| | |||| | ||||| ||| ||||| ||| | | Sbjct 465790 GTTCGCCACCAGCAAG-ACCAACCCGTGCATCTCTCAGTATTCCACAGGACAAGTGACGG 465732 Query 4257 TCAAAATAGAATGGGAAATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGT 4316 | |||| |||||||| | || || ||| ||||| |||||||| |||| || ||| Sbjct 465731 TTGAAATCGAATGGGAGCTTCAAAAAGAGTCGTCCACGAGATGGAGTCCAGGAGTGCAGC 465672 Query 4317 TCACGTCCAACTACGGAGCACAGGACTCGC-TTCTCTGGGCTCCCGACAACGCCGGAGCC 4375 ||| | | || ||| | ||| | | ||| | ||| |||| || | ||||| Sbjct 465671 ACACAGCAAGCTTCGGCACCGAGGCTACACTTTCATTTGGC-CCCGGCAGCAACGGAGTG 465613 Query 4376 TACAAAGAGCCCAGGGCCATTGGATCCCGATACCTCACCAACCACCTCTAGCCCAATTCT 4435 | ||| ||||||| | ||| | | ||||||||| || ||||| ||||| | Sbjct 465612 TGTCCAGAATCCAGGGCGACTGGCACTCATTACCTCACCTGCCCGCTCTAACCCAACAAT 465553 Query 4436 GTTGCATACCCTCAATAAACCGTGTATTCGT 4466 |||||||| | ||||||| | ||||||| || Sbjct 465552 GTTGCATATCATCAATAAGCTGTGTATTTGT 465522 Score = 161 bits (178), Expect = 3e-36 Identities = 475/729 (65%), Gaps = 16/729 (2%) Strand=Plus/Minus Query 1061 ATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCC 1120 ||||| || || || || ||| | || |||| ||||| || ||| || ||| | Sbjct 469153 ATCACCTCAGAAAAACAATGGCTACAAGAGAGCCAGGAATCTTATCTGAGCTACAATGCA 469094 Query 1121 ACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGT 1180 || |||| || |||||||||||||| | || | || || || | || || |||||| Sbjct 469093 ACTGGAATATCCAGGAGCCAGATTAAATCTGCTTTGGAGAATGCATGTAAGATCATGAGT 469034 Query 1181 CTGACCAAATCTGCCTCAGACTATCTCGTGGGACAG--ACTGTTCCAGAGGACATTTCTG 1238 ||||| || | || || ||| | | || | |||| ||| | |||||| Sbjct 469033 CTGACAAA--CAACCAGTGATTATTTGGCCGGTAATGAACTG--CCAAATGACATTAAGA 468978 Query 1239 AAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGGGCTCTG 1298 || | || | | || ||||| || || || || || || ||||| || || | Sbjct 468977 CCAATCGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATATGCTGGAAGGG 468918 Query 1299 TTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGAC 1358 || | |||||||| |||||||| || ||||| ||||| ||| ||| | Sbjct 468917 CGCTGGATGGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTC 468858 Query 1359 CC---GCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTT 1415 | || || ||||||||||| ||||| || ||||||||||| | || | |||| Sbjct 468857 CTAATGCAACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTT 468798 Query 1416 ATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGT 1475 |||| ||||| || ||||| ||||| ||||| | || ||| Sbjct 468797 ATGGATGTGTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGA 468738 Query 1476 TGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCT 1535 | ||||||||||| || ||||| ||||| |||||| || | | || ||||||| Sbjct 468737 TCATCTGGTGGGAAGAAGGAAAAATGACGGCCAAGGTTGTC-AGTCTGCAGAGGCCATTC 468679 Query 1536 TgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCT- 1594 | | || | || | | || ||||| || || |||||| ||| || ||| Sbjct 468678 TCGATGGAAGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGA-TCTG 468620 Query 1595 ACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACG 1654 || || |||| | | || || ||||||||||||||||| || ||||||| || || | Sbjct 468619 ACACCAGTGACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATA 468560 Query 1655 ACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGC--GGC 1712 || || ||||| || ||||| |||| || | || |||| ||||||||| ||| | | Sbjct 468559 ACATTCGAACATCAACAGCCTTTGGAGGATCAAATATTCAAATTTGAACT--TGCCTGCC 468502 Query 1713 GGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTTTGCTTGGG 1772 || | || ||| | ||||| || || || ||||||| || ||||| |||| Sbjct 468501 AACTTGATCATGACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGG 468442 Query 1773 CAAAGGTCA 1781 |||||| || Sbjct 468441 CAAAGGCCA 468433 Score = 145 bits (160), Expect = 2e-31 Identities = 282/411 (69%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 2209 AGTAGTCATGTCTTTTGTTGACCACCCTCCAGATTGGTTGGAATCGATCGGCGACGGCTT 2268 ||||||||||||| |||||| || ||||||| |||||||||| | ||| | | Sbjct 467999 AGTAGTCATGTCTCTTGTTGCTCATCCTCCAGCTTGGTTGGAAAAGGCTGGCTGTGCACT 467940 Query 2269 TCGTGAATTTCTCGGCCTTGAGGCGGGTCCCCCGAAACCCAAGGCCAATCAACAGAAGCA 2328 | ||| ||| | |||||||| | || || || || || || |||||||| || | Sbjct 467939 TGCTGAGTTTTTTCATCTTGAGGCAAGACCTCCAAAGCCAAAAGCTAATCAACA-AATTA 467881 Query 2329 AGATAACGCTCGAGGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCT 2388 ||| ||| | |||| | ||| ||||||| ||||| ||| |||| | || || || Sbjct 467880 AGACAACACCAGAGGGCCTGTTGTTCCTGGATACAAATATTTTGGATCATTTAATGGTCT 467821 Query 2389 TGATAAGGGCGATCCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTA 2448 | ||| || || | || || || ||| ||||||| |||||||||| | || Sbjct 467820 AGGTAAAGGAGAGCTAGTTAACAGAGCAGACACGGTTGCCAAAGAGCACGACAAGGCATA 467761 Query 2449 CCAGAAACAGCTTGAGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGA 2508 | ||| ||| | || ||| | || | || | ||||||||||| || || || Sbjct 467760 TAATCAACTCCTTAACAGCGGTGATTATCCACATCTAACATACAACCACGCAGATGCTGA 467701 Query 2509 GTTTCAGGAGAAACTCGCTTCTGAC-ACTTCTTTTGGGGGAAACCTTGG-GAAGGCTGTT 2566 ||||||| |||| ||||| ||| || || | || ||||||||||| || | |||| Sbjct 467700 GTTTCAGAAGAAGCTCGCAGACGACAACATCGCTAGGTGGAAACCTTGGAAAAAGTTGTT 467641 Query 2567 TTCCAGGCTAAAAAGA-GGATTCTCGAACCTCTTGGCCTGGTTGAGACGCC 2616 |||||||| ||||| | || ||| |||||| || ||||| || | ||| Sbjct 467640 TTCCAGGCCAAAAAAACGGGTTCCCGAACCCTGTGCTCTGGTAGAAAAGCC 467590 Score = 118 bits (130), Expect = 3e-23 Identities = 195/275 (71%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 2849 CAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGGTCA 2908 || ||| |||| |||||||| | | |||| || ||||||||||||||||||| ||| Sbjct 467356 CAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGG-GT 467298 Query 2909 GAGAGCCA-CGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCA 2967 | | | || |||| ||| | || ||| | ||||||| |||||| | |||||||||||| Sbjct 467297 GGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTGCC-AACTACAACAACCA 467239 Query 2968 CCTGTACCTG-----CGGCTCGGCTCGAGCAAC----GCCAGCGACACC---TTCAACGG 3015 ||||| | | | | || ||||||| || |||| | | | |||| Sbjct 467238 CCTGTTCAAGAAAATCAACAACTCTGGAGCAACTGGAAACAATGACAACCAGTACTACGG 467179 Query 3016 ATTCTCCACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAG 3075 |||| || || ||||||||||| ||||| || || || || ||||||| || | Sbjct 467178 ATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCCTTCA 467120 Query 3076 AGACTGGCAAAGGCTCATCAACAACCACTGGGGAC 3110 |||||||||| |||||||| | ||||||||||| Sbjct 467119 AGACTGGCAACATCTCATCAATAGCCACTGGGGAC 467085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903700048380