Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq546 154 4e-34 >seq546 Length=548233 Score = 154 bits (170), Expect = 4e-34 Identities = 200/272 (74%), Gaps = 7/272 (3%) Strand=Plus/Minus Query 3819 ACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTTCATC 3878 ||| || ||| ||||| || |||||| |||||| ||| | ||||||||||||||||||| Sbjct 465940 ACACTTCCTTCCAGGGACCGATTTGGTCTAAAAGTCCTCACACAGATGGACATTTTCATC 465881 Query 3879 CTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATCAAAA 3938 | || || | |||||| |||||| | |||||||| ||| || ||||| || |||| Sbjct 465880 CCTCGCCACTGACGGGTGGATTTGGACTGAAACATCC-CCGTCTCAAATTCTAATGAAAA 465822 Query 3939 ATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTA---GTT 3995 |||| || |||||||| |||||||||| || ||| ||| || |||| | | Sbjct 465821 ATACTCCGGTTCCTGCAAATCCTCCAACAACGTTC--GCCACCAGCA-AGACCAACCCGT 465765 Query 3996 TCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGAAAG 4055 ||| || | || ||||||||||| || |||||||| |||||| | || |||| Sbjct 465764 GCATCTCTCAGTATTCCACAGGACAAGTGACGGTTGAAATCGAATGGGAGCTTCAAAAAG 465705 Query 4056 AATCCTCCAAAAGATGGAATCCAGAAGTACAG 4087 | || |||| ||||||| ||||| ||| ||| Sbjct 465704 AGTCGTCCACGAGATGGAGTCCAGGAGTGCAG 465673 Score = 107 bits (118), Expect = 5e-20 Identities = 344/522 (66%), Gaps = 20/522 (4%) Strand=Plus/Minus Query 2600 ATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAGTGGGT 2659 |||||| |||| || ||| | || |||| || || ||||| |||| |||||||| Sbjct 467395 ATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATGTGCAGGGTTCCGATGGAGTGGGC 467336 Query 2660 AATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTACAAAG 2719 | |||||| || |||||||||||||| ||| ||| |||| | | ||||| ||||| Sbjct 467335 ACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTGGGTGTCAGAGTCATCACAAAA 467276 Query 2720 TCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCAACTTT 2779 || ||| | || |||| || || ||| || || || || | | | |||||| Sbjct 467275 TCTACCGGTACCTGGGCCCTGCCAACT-ACAACAACCACCTGTTCAAGAAAATCAACAAC 467217 Query 2780 GACGGCACCACAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACTCCCTGGGGG 2839 || | || || || || ||| || |||| | | | ||||| Sbjct 467216 TCTGGAGCAACTGGAAACAATGACAAC-CAG--TACTACGGATTCGGCATCCTGTGGGGA 467160 Query 2840 TACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGACTCATC 2899 ||||| ||||||||||| || ||| ||||||| |||| | |||||||||| |||||| Sbjct 467159 TACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCCTTCAAGACTGGCAACATCTCATC 467101 Query 2900 AACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAACGTCCAAGTC 2959 || | | ||| || | || ||| | || | | || | || ||| | |||||| Sbjct 467100 AATAGC--CACTGG----GGACCAAAAAGGCTTGACTTGAAGCTTTTCAACATTCAAGTC 467047 Query 2960 AAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACCAGCACCGTA 3019 | |||||| | |||||| || |||| || || | || |||||||| ||||| | Sbjct 467046 AGAGAAGTCATAACACATGA--CAAC----AC-ATCACTAATAATCTCACAAGCACAATC 466994 Query 3020 CAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTGCTACAC-AAGG 3078 ||| | || |||||| |||| | ||| |||| | || | ||| |||| |||| Sbjct 466993 CAGGTGTTGGCGGACTCAGACTATCAGCTACGGTATGCAGCGGGGAATGC-ACACGAAGG 466935 Query 3079 CACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACA 3120 || | ||||| ||||| | |||||| ||| ||||| Sbjct 466934 AACGCTGCCTCCGTTTCCAGCAGGTGTATTCATGGCTCCACA 466893 Score = 98.7 bits (108), Expect = 3e-17 Identities = 140/193 (73%), Gaps = 13/193 (7%) Strand=Plus/Minus Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCA---GCTACTACCGGCAAA 1325 || || ||||| || |||||||| |||||| ||| |||||| || |||||||| || Sbjct 468897 AAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCAACTACCGGAAAG 468838 Query 1326 ACCATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGG---TGTTAATTGG 1382 || | ||| || |||| || || ||| |||| |||||| ||| |||||||||| Sbjct 468837 ACAAACATTGCAGAAGCCATCTCATATGTTGTT---CTGTTTTATGGATGTGTTAATTGG 468781 Query 1383 ACTAATGAAAACTTTCCCTTCTGTAACT--GTCCAGGGAAACTGCTTATCTGGTGGGAGG 1440 || |||||||||||||| ||| | | | || | || || | ||||||||||| | Sbjct 468780 ACCAATGAAAACTTTCCATTCAATGATTACATCAA--CAAGATGATCATCTGGTGGGAAG 468723 Query 1441 AGGGCAAGATGAC 1453 | || || ||||| Sbjct 468722 AAGGAAAAATGAC 468710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14068606507670