Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq546 295 2e-76 >seq546 Length=548233 Score = 295 bits (326), Expect = 2e-76 Identities = 416/581 (72%), Gaps = 24/581 (4%) Strand=Plus/Minus Query 2698 CAGCAGCGCCCTCTGGTGTGGGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGG 2757 ||| || | |||| | ||||| ||| ||||||||||||||| |||||| ||||||| Sbjct 467427 CAGTAGTGTCCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGG 467368 Query 2758 CAGACAATAACGAAGGCGCCGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATT 2817 ||||| | || |||| |||||||| | |||||||||||||||||||||||||| Sbjct 467367 GCCACAATGTGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATT 467308 Query 2818 CCACATGGCTGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCT 2877 |||||||| |||| | |||||||||||| | ||| | |||||||||||| ||| || Sbjct 467307 CCACATGGGTGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTG-CCAACT 467249 Query 2878 ACAACAACCACCTCTACAAGCAAATCTCCAACGGGACATCGGGAGGA---GCCACCAACG 2934 ||||||||||||| | |||| ||||| |||| || |||| | | | ||| | Sbjct 467248 ACAACAACCACCTGTTCAAGAAAATCAACAAC------TCTGGAGCAACTGGAAACAATG 467195 Query 2935 ACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACT 2994 ||||| |||| ||| | | ||| || ||||| || || ||||| || | || || Sbjct 467194 ACAACCAGTACTACGGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATG 467136 Query 2995 GCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCA 3054 |||||||||| | | |||||||| | |||||||| | | |||||||| || | Sbjct 467135 GCCACTTTTCCCTTCAAGACTGGCAACATCTCATCAATAGCCACTGGGGA------CCAA 467082 Query 3055 AGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCA 3114 | || || ||| ||||| |||||||| || |||| || |||| |||| || Sbjct 467081 AAAGGCTTGACTTGAAGCTTTTCAACATTCAAGTCAGAGAAGTCATAACACATGA---CA 467025 Query 3115 CCAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACC 3174 || |||| | ||||| ||||| ||||| ||||||||||| ||||||| || || | Sbjct 467024 ACA----CATCACTAATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATC 466969 Query 3175 AGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACG 3234 |||| | ||| | || ||| ||| | || ||||||||||| || || | | Sbjct 466968 AGCTACGGTATGCAGCGGGGAATGCACACGAAGGAACGCTGCCTCCGTTTCCAGCAGGTG 466909 Query 3235 TGTTCATGATTCCCCAGTACGGCTACCTAACACTCAACAAC 3275 | |||||| ||| ||| | || || ||||| ||||||||| Sbjct 466908 TATTCATGGCTCCACAGCATGGATATCTAACTCTCAACAAC 466868 Score = 262 bits (290), Expect = 1e-66 Identities = 391/549 (71%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 1184 GGCTGGGCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCC---GCC 1240 |||||| ||| |||||||| || ||| | ||||| |||||| ||||||| || || Sbjct 468909 GGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCA 468850 Query 1241 ACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGC 1300 || ||||| ||||| |||||||| ||||||||| | | | || | || || || || Sbjct 468849 ACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGT 468790 Query 1301 GTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGG 1360 || || ||||||||||| |||||||| |||||||||| | || |||||||| | |||||| Sbjct 468789 GTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGATCATCTGG 468730 Query 1361 TGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGC 1420 ||||| || || || |||||||||||||| || |||| || |||||||||||| || Sbjct 468729 TGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCTCGATGGA 468671 Query 1421 AGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTG 1480 || || | | ||||||||||||||||| || |||| || | || || ||| Sbjct 468670 AGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACACCAGTG 468611 Query 1481 ATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAG 1540 | || || || || || |||||||| | || || || || || | || ||||| Sbjct 468610 ACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAACATTCGAA 468551 Query 1541 CACCAGCAGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCAC 1600 || || |||||| | |||| | || || || || ||||| || ||| || || || Sbjct 468550 CATCAACAGCCTTTGGAGGATCAAATATTCAAATTTGAACTTGCCTGCCAACTTGATCAT 468491 Query 1601 GACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTG------GGCCAGT 1654 |||||| | ||| | ||||| || ||||||||||||| ||| ||||||| Sbjct 468490 GACTTTAGGAAGATCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGGCAAAGGCCAGT 468431 Query 1655 GATCACGTGACCGAGGTGGCGCATGAGTTTTACGTCAGAAAGGGCGGA-GCCAGCAAAAG 1713 || ||| || || ||| |||||| | || | |||||| ||| || | ||||| Sbjct 468430 GA----GTG--TGATGTCACGCGGGAGTTTGATGTTA-AAAGGGTGGAGGCTAAGAAAAG 468378 Query 1714 ACCCGCCCC 1722 | ||||||| Sbjct 468377 ATCCGCCCC 468369 Score = 122 bits (134), Expect = 2e-24 Identities = 230/335 (69%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 3867 GCAGATAACTTGCAGCAGCAAAACACGGCTCCTCAAATTGGAACTGTCAACAGCCAGGGG 3926 ||||| ||| |||||||| || ||| | || | | | || |||||| |||||| Sbjct 466035 GCAGACAACGTGCAGCAGACAAGCACAGGACCAACACTGGAAAACGTCAACCACCAGGGA 465976 Query 3927 GCCTTACCCGGTATGGTCTGGCAGAACCGGGACGTGTACCTGC----AGGGTCCCATCTG 3982 | | | || || ||||| |||| | | || || || | | |||| || || || Sbjct 465975 GTCGTTCCGGGAATGGTGTGGCGAGATCATGAAGTACACTTCCTTCCAGGGACCGATTTG 465916 Query 3983 GGCCAAGATTCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGG 4042 | | || | ||||||||| || || | || || || || || |||| ||| || ||||| Sbjct 465915 GTCTAAAAGTCCTCACACAGATGGACATTTTCATCCCTCGCCACTGACGGGTGGATTTGG 465856 Query 4043 CCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCC 4102 ||||||||||| ||| |||| || || || || || || || || ||||| ||||||| Sbjct 465855 ACTGAAACATCC-CCGTCTCAAATTCTAATGAAAAATACTCCGGTTCCTGCAAATCCTCC 465797 Query 4103 GACCACCTT--CAACCAGTCAAAGCTGAACTCTTTCATCACGCAATACAGCACCGGACAG 4160 || || || | ||||| ||| ||| | | |||| | || || ||| ||||| Sbjct 465796 AACAACGTTCGCCACCAG--CAAGACCAACCCGTGCATCTCTCAGTATTCCACAGGACAA 465739 Query 4161 GTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGA 4195 || | || ||||| ||||||||||| || || || Sbjct 465738 GTGACGGTTGAAATCGAATGGGAGCTTCAAAAAGA 465704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13943822415380