Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq546 201 3e-48 >seq546 Length=548233 Score = 201 bits (222), Expect = 3e-48 Identities = 334/476 (70%), Gaps = 20/476 (4%) Strand=Plus/Minus Query 2839 CCTCTAGTGTGGGATCATCTGTCATGGCTGAAGGAGGTGGCGGTCCAATGGGCGATGCAG 2898 |||| | | ||||||| | ||||||| ||| |||||| | ||||||||| | | Sbjct 467418 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATG 467359 Query 2899 GCCAAGGTGCCGACGGAGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGC 2958 || ||| |||| |||||||||| |||||||||||||||||||||||||||| |||| Sbjct 467358 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 467299 Query 2959 TGGACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACC 3018 ||| | ||||| | || | | || | ||||||| |||| ||| ||||||||||| Sbjct 467298 TGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTG-CCAACTACAACAACC 467240 Query 3019 ACTTGTACAAGCGGATCCAAGGAC-CGGGAGGAACCG---ACCCCAACAATAAATTCTTT 3074 || ||| |||| || ||| || | |||| ||| | || |||| | | || Sbjct 467239 ACCTGTTCAAGAAAAT-CAACAACTCTGGAGCAACTGGAAACAATGACAACCAGTACTAC 467181 Query 3075 GGATTCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCC 3134 |||||| ||| || ||||| ||||| |||| ||| || || || ||||||| |||| Sbjct 467180 GGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCCTT 467122 Query 3135 CGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATGCGCTTT 3194 | ||||||||||| |||||||| | | |||||| |||| ||| | | ||| Sbjct 467121 CAAGACTGGCAACATCTCATCAATAGCCACTGGG------GACCAAAAAGGCTTGACTTG 467068 Query 3195 AGACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACTCCAACACCACCATCGCC 3254 | || || ||||| || || | |||||||| || || ||||| |||| | Sbjct 467067 AAGCTTTTCAACATTCAAGTCAGAGAAGTCATAACACATGA---CAACA----CATCACT 467015 Query 3255 AACAACCTCACCAGCACGGTCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCGTA 3310 || || ||||| ||||| |||| || || |||||| ||||| ||||| | ||| Sbjct 467014 AATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTA 466959 Score = 178 bits (196), Expect = 4e-41 Identities = 308/446 (69%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 1129 AACCGCATCTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATT 1188 || || || ||||| || || ||||| || || || || || || | || || Sbjct 468975 AATCGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATATGCTGGAAGGGCG 468916 Query 1189 TTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCT 1248 ||| || ||||| || || || | || || ||||||| | ||| |||| || ||| Sbjct 468915 CTGGATGGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCT 468856 Query 1249 ---GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305 || || ||||| ||||| ||||| || || || || | ||| ||| | ||| ||| Sbjct 468855 AATGCAACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTAT 468796 Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365 ||||| ||||| |||||||| || |||||||| ||||| || | | || | |||||||| Sbjct 468795 GGATGTGTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGATC 468736 Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425 |||||||||||||| || |||||||| |||||||| || | | || | || ||||| Sbjct 468735 ATCTGGTGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCTC 468677 Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485 | ||| || || | | |||||||| ||||| | || | || || | ||| Sbjct 468676 GATGGAAGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACA 468617 Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACG 1545 || || | | | || || || ||||||||| |||||| || || || | | || Sbjct 468616 CCAGTGACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAACA 468557 Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGA 1571 ||||| ||| | ||||| |||||||| Sbjct 468556 TTCGAACATCAACAGCCTTTGGAGGA 468531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14868504535170