Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14]
11,654 sequences; 2,034,575,300 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq546 201 3e-48
>seq546
Length=548233
Score = 201 bits (222), Expect = 3e-48
Identities = 334/476 (70%), Gaps = 20/476 (4%)
Strand=Plus/Minus
Query 2839 CCTCTAGTGTGGGATCATCTGTCATGGCTGAAGGAGGTGGCGGTCCAATGGGCGATGCAG 2898
|||| | | ||||||| | ||||||| ||| |||||| | ||||||||| | |
Sbjct 467418 CCTCAAATTTGGGATCTAGTACAATGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATG 467359
Query 2899 GCCAAGGTGCCGACGGAGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGC 2958
|| ||| |||| |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 467358 TGCAGGGTTCCGATGGAGTGGGCACTTCCTCGGGAAATTGGCATTGCGATTCCACATGGG 467299
Query 2959 TGGACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACC 3018
||| | ||||| | || | | || | ||||||| |||| ||| |||||||||||
Sbjct 467298 TGGGTGTCAGAGTCATCACAAAATCTACCGGTACCTGGGCCCTG-CCAACTACAACAACC 467240
Query 3019 ACTTGTACAAGCGGATCCAAGGAC-CGGGAGGAACCG---ACCCCAACAATAAATTCTTT 3074
|| ||| |||| || ||| || | |||| ||| | || |||| | | ||
Sbjct 467239 ACCTGTTCAAGAAAAT-CAACAACTCTGGAGCAACTGGAAACAATGACAACCAGTACTAC 467181
Query 3075 GGATTCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCC 3134
|||||| ||| || ||||| ||||| |||| ||| || || || ||||||| ||||
Sbjct 467180 GGATTCGGCATCCTGTGGGGATACTTGGACTTCAATCGGTT-CATGGCCACTTTTCCCTT 467122
Query 3135 CGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATGCGCTTT 3194
| ||||||||||| |||||||| | | |||||| |||| ||| | | |||
Sbjct 467121 CAAGACTGGCAACATCTCATCAATAGCCACTGGG------GACCAAAAAGGCTTGACTTG 467068
Query 3195 AGACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACTCCAACACCACCATCGCC 3254
| || || ||||| || || | |||||||| || || ||||| |||| |
Sbjct 467067 AAGCTTTTCAACATTCAAGTCAGAGAAGTCATAACACATGA---CAACA----CATCACT 467015
Query 3255 AACAACCTCACCAGCACGGTCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCGTA 3310
|| || ||||| ||||| |||| || || |||||| ||||| ||||| | |||
Sbjct 467014 AATAATCTCACAAGCACAATCCAGGTGTTGGCGGACTCAGACTATCAGCTACGGTA 466959
Score = 178 bits (196), Expect = 4e-41
Identities = 308/446 (69%), Gaps = 4/446 (1%)
Strand=Plus/Minus
Query 1129 AACCGCATCTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATT 1188
|| || || ||||| || || ||||| || || || || || || | || ||
Sbjct 468975 AATCGGATATACAAAATGTTTGAACTAAATGGATATGATCCTGCATATGCTGGAAGGGCG 468916
Query 1189 TTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCT 1248
||| || ||||| || || || | || || ||||||| | ||| |||| || |||
Sbjct 468915 CTGGATGGCTGGTGTCAAAAAAAGTTTGGAAAAAGAAACACTATCTGGGTGTTTGGTCCT 468856
Query 1249 ---GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305
|| || ||||| ||||| ||||| || || || || | ||| ||| | ||| |||
Sbjct 468855 AATGCAACTACCGGAAAGACAAACATTGCAGAAGCCATCTCATATGTTGTTCTGTTTTAT 468796
Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365
||||| ||||| |||||||| || |||||||| ||||| || | | || | ||||||||
Sbjct 468795 GGATGTGTTAATTGGACCAATGAAAACTTTCCATTCAATGATTACATCAACAAGATGATC 468736
Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425
|||||||||||||| || |||||||| |||||||| || | | || | || |||||
Sbjct 468735 ATCTGGTGGGAAGAAGGAAAAATGACGGCCAAGGTTGT-CAGTCTGCAGAGGCCATTCTC 468677
Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485
| ||| || || | | |||||||| ||||| | || | || || | |||
Sbjct 468676 GATGGAAGTCCTGTTTGTATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACA 468617
Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACG 1545
|| || | | | || || || ||||||||| |||||| || || || | | ||
Sbjct 468616 CCAGTGACTGTGACTTCAAATACTAACATGTGTGTTGTCATGGATGGAAATTCAATAACA 468557
Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGA 1571
||||| ||| | ||||| ||||||||
Sbjct 468556 TTCGAACATCAACAGCCTTTGGAGGA 468531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14868504535170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |