Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq546 205 3e-49 >seq546 Length=548233 Score = 205 bits (226), Expect = 3e-49 Identities = 372/539 (69%), Gaps = 24/539 (4%) Strand=Plus/Minus Query 2636 TGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTGCCGATGGAGTGGGTA 2695 ||||||| ||||||||| | ||| ||||| || ||| || ||| ||||||||||||| | Sbjct 467394 TGGCTGCAGGTGGTGGCAGCCCAATGGGCCACAATGTGCAGGGTTCCGATGGAGTGGGCA 467335 Query 2696 ATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGCTGTCATCACCAAGT 2755 | |||| ||||||||||||| ||||||| ||| ||| | | |||||||| || | Sbjct 467334 CTTCCTCGGGAAATTGGCATTGCGATTCCACATGGGTGGGTGTCAGAGTCATCACAAAAT 467275 Query 2756 CCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGAT---CCAGT 2812 | ||| | |||||| |||| || ||||||||||||||| | | | || | | | Sbjct 467274 CTACCGGTACCTGGGCCCTG-CCAACTACAACAACCACCTGTTCAAGAAAATCAACAACT 467216 Query 2813 CCAGCGGCACCGGA------GACGGCACGTACTTTGGTTACAGCACGCCTTGGGGATACT 2866 | | | || ||| ||| | ||||| || | | ||| | |||||||||| Sbjct 467215 CTGGAGCAACTGGAAACAATGACAACCAGTACTACGGATTCGGCATCCTGTGGGGATACT 467156 Query 2867 TCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACA 2926 | || |||||||| || || |||||||||| | |||||||| | |||||||| | Sbjct 467155 TGGACTTCAATCGGTT-CATGGCCACTTTTCCCTTCAAGACTGGCAACATCTCATCAATA 467097 Query 2927 ACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAGG 2986 |||||||| | || || |||| |||| ||||| |||||||| || |||| | Sbjct 467096 GCCACTGGG------GACCAAAAAGGCTTGACTTGAAGCTTTTCAACATTCAAGTCAGAG 467043 Query 2987 AGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGG 3046 | |||| || || | | || || |||| | || || ||||| ||||| || |||| Sbjct 467042 AAGTCATAAC-AC--ATGACAACA----CATCACTAATAATCTCACAAGCACAATCCAGG 466990 Query 3047 TCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGCC 3106 | || |||||| | || || ||||| | ||| | || || || ||||| || | Sbjct 466989 TGTTGGCGGACTCAGACTATCAGCTACGGTATGCAGCGGGGAATGCACACGAAGGAACGC 466930 Query 3107 TGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCAAC 3165 |||| ||||| || || | || |||||| || ||| | | || || || |||||| Sbjct 466929 TGCCTCCGTTTCCAGCAGGTGTATTCATGGCTCCACAGCATGGATATCTAACTCTCAAC 466871 Score = 116 bits (128), Expect = 1e-22 Identities = 220/322 (68%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 1091 AACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCACCGGCTTC 1150 || || || || || || || || || || | |||| |||||||| | | || Sbjct 468948 AATGGATATGATCCTGCATATGCTGGAAGGGCGCTGGATGGCTGGTGTCAAAAAAAGTTT 468889 Query 1151 GGCAAGCGCAACACCGTCTGGCTCTTCGGGCCG---GCCACGACCGGCAAGACGAACCTC 1207 || || | ||||| ||||| | || || || || || ||||| ||||| ||| | Sbjct 468888 GGAAAAAGAAACACTATCTGGGTGTTTGGTCCTAATGCAACTACCGGAAAGACAAACATT 468829 Query 1208 GCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAAC 1267 || || |||||| | || | || || || || || || |||||||| || ||| Sbjct 468828 GCAGAAGCCATCTCATATGTTGTTCTGTTTTATGGATGTGTTAATTGGACCAATGAAAAC 468769 Query 1268 TTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACG 1327 || || ||||| || | | | |||||||||||||||||||||| || || || |||||| Sbjct 468768 TTTCCATTCAATGATTACATCAACAAGATGATCATCTGGTGGGAAGAAGGAAAAATGACG 468709 Query 1328 TCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAG 1387 ||||||| ||| || || ||||||| |||| || || || | | ||||| Sbjct 468708 GCCAAGGTTGTC-AGTCTGCAGAGGCCATTCTCGATGGAAGTCCTGTTTGTATTGACCAA 468650 Query 1388 AAGTGCAAGAACTCGCAGCAGA 1409 ||||||||| ||| || |||| Sbjct 468649 AAGTGCAAGTCCTCTCAACAGA 468628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13601466059610