Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq7783 86.0 2e-13 seq2 86.0 2e-13 >seq7783 Length=2409966 Score = 86.0 bits (94), Expect = 2e-13 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 1604 TGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCT 1663 ||| |||||||| || || | ||| || |||||||||||||||||||| || | || || Sbjct 840270 TGGTTGTGTTAAATGAACCAGTGAAAATTTTCCTTTTAATGATTGTGTGGACAGAAAACT 840211 Query 1664 GATTTGGTGGGAGGAGGGAAAAATGACT-AATAAGGTTGTTGAATCTGCAAAAGCAATTT 1722 ||||||||| | ||| ||||| | ||| || || || ||| | || ||||| ||| Sbjct 840210 CATTTGGTGGAAAGAGAGAAAATTAACTGAAAAAAACAGTAGAAACAGCTAAAGCTATTA 840151 Query 1723 TGGGAGG 1729 |||| || Sbjct 840150 TGGGTGG 840144 >seq2 Length=23256100 Score = 86.0 bits (94), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661 ||||| |||||||| ||||| ||||| |||||||| || || ||| ||||| | |||| Sbjct 18946697 TATGGATGTGTTAATTGGACAAATGAAAACTTTCCATTCAAGGATGGTGTTCACAAAAAA 18946638 Query 1662 CTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTG-TTGAATCTGCAAAAGCAAT 1720 || |||||| | || | |||||||| | | |||| || || || ||||||||||| | Sbjct 18946637 TTGGTTTGGTTGAAGAAAGGAAAAATCA-TGATAAAAATGATTAAAACTGCAAAAGCAGT 18946579 Query 1721 TTTGGGAGG 1729 | | | ||| Sbjct 18946578 TCTAGAAGG 18946570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16225802838080