Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq42 161 3e-36 >seq42 Length=14527517 Score = 161 bits (178), Expect = 3e-36 Identities = 169/221 (76%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACA-CCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAAC 1346 ||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | | Sbjct 2766509 AGTTCAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 2766568 Query 1347 ATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAG 1406 |||| |||||| || |||| ||||||| || || || || | ||||||||| |||| | Sbjct 2766569 ATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGG 2766628 Query 1407 AACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATG 1466 |||||||| ||||| ||||| || || ||||||||||| ||||||||||| || |||||| Sbjct 2766629 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 2766688 Query 1467 ACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGG 1507 ||| || | || ||||| || ||||||||| | || || Sbjct 2766689 ACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGG 2766729 Score = 120 bits (132), Expect = 9e-24 Identities = 240/348 (69%), Gaps = 22/348 (6%) Strand=Plus/Plus Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930 ||||| |||||||||||| | ||||| |||| | ||| | || ||||||| | Sbjct 2768063 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC----TCGTCACCACTCG 2768117 Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987 ||| |||| |||| | ||| ||| ||||| | |||||||| || ||| | Sbjct 2768118 TTCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGG 2768177 Query 2988 CCAATCAGGAGCCTCGAACGACAA-TCA--CTACTTTGGCTACAGCACCCCTTGGGGGTA 3044 ||| ||||| |||| || |||||| || |||||||||||| ||| || Sbjct 2768178 CCAT------GCCTCT---GACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTA 2768227 Query 3045 TTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAA 3104 | ||||||||||||||||| ||||||| || | ||||| || |||||||||| Sbjct 2768228 CCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAA 2768287 Query 3105 CAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAA 3164 |||| ||||||| || |||| ||| | | |||| | || ||||| ||||| || Sbjct 2768288 CAACTACTGGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAA 2768347 Query 3165 AGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTAC 3212 ||||||| | || | || || | ||| |||||||||||||| || Sbjct 2768348 GGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 2768395 Score = 80.6 bits (88), Expect = 8e-12 Identities = 184/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 4023 GGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACA 4082 ||| | ||| | || || ||||| || || ||||| || ||||| |||| || || | Sbjct 2769422 GGATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAA 2769481 Query 4083 TTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCT 4142 |||||| || ||| |||||| || | || ||||| || ||||| |||||| Sbjct 2769482 TTTTCAGCCTCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCT 2769541 Query 4143 CATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTCAGTG---CGGCAAAGTT 4199 || || || || || ||||| | ||| | | |||||| || || | | | Sbjct 2769542 GCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTA---T 2769598 Query 4200 TGCTTCCTTCATCACACAGTACTCCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCT 4259 | || || || | ||||| ||||| || ||||| | ||||| || || ||||||| Sbjct 2769599 TAAGTCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCA 2769658 Query 4260 GCAGAAGGAAAACAGCAAACGCTGGAATCCCGAAAT 4295 | ||| |||||||||||||||||| || || Sbjct 2769659 AAAATCAGAATCCAGCAAACGCTGGAATCCAGAGAT 2769694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860528883280