Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq42 325 1e-85 >seq42 Length=14527517 Score = 325 bits (360), Expect = 1e-85 Identities = 459/640 (72%), Gaps = 5/640 (1%) Strand=Plus/Plus Query 1334 AGCTGCACTGGAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCT 1393 ||| |||||||| || || || || |||||| | |||||||| | || | ||||| Sbjct 2766333 AGCAGCACTGGAGAACGCGCGAGCCGAAATGCTCCTGACAAAGTCGGCCGAAGGCTACCT 2766392 Query 1394 GATAGGAAAAGACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAAT 1453 | |||| || || ||| ||| || || | ||| | ||| | |||| || | | | Sbjct 2766393 GCTAGGCAAGCTTCCAGTCGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGT 2766452 Query 1454 GAATAACTACAACCCTCAATACATAGGAAGTATCCTGTGCGGCTGGGTGAAGAGAGAGTT 1513 |||| ||| |||| | || | ||||| |||||| | | ||||| Sbjct 2766453 GAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGCTCGCTGGGCCCGGCGGGAGTT 2766512 Query 1514 CAACAAAAGAAAC-GCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTG 1572 |||||| | ||| ||||| ||| ||||| ||||||| |||||| | ||||| | ||| | Sbjct 2766513 CAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCG 2766572 Query 1573 CAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACT 1632 || |||||||||| |||||| || || |||||||||| ||||||||||||| ||||| Sbjct 2766573 TGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACT 2766632 Query 1633 TTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTA 1692 ||||||| ||||| || || ||||| ||| |||||||||||||||| ||||| ||||| | Sbjct 2766633 TTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCA 2766692 Query 1693 ATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGT-CCGGGTAGACCAG 1751 ||| |||| || ||||| ||||| |||||||| ||||| || | | |||| || || Sbjct 2766693 GTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCGGGGTTGATCAA 2766752 Query 1752 AAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGAT 1811 ||||||||||| ||||| |||||||| || |||||| ||||||| ||||||| || Sbjct 2766753 AAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATAT 2766812 Query 1812 ATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGAG 1871 | ||||| | |||||||| ||| ||||| ||||||||| ||| || ||||| Sbjct 2766813 AAGTGTACTGTGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAA 2766872 Query 1872 CGTATGTTTCAAATTGTCCTATCACA-TAAATTGGAGCCTTCTTTTGGAAAAATTTCTAA 1930 | ||||| | || | ||||| |||| || | | ||||| |||| ||| Sbjct 2766873 AGAATGTTCC--TTTTTAGGTTCACAGTAAAACTCAGGCATGATTTGGGGAAATAAGTAA 2766930 Query 1931 AAAAGAAGTCAGAGAATTTTTCAAATGGGCCAATGACAAT 1970 | || | |||||||||||| | |||| | ||| |||| Sbjct 2766931 ATGGGAGATAAGAGAATTTTTCCAGTGGGGCCATGGCAAT 2766970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226903955020