Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq42 149 2e-32 >seq42 Length=14527517 Score = 149 bits (164), Expect = 2e-32 Identities = 195/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098 ||| | || || || || ||||| ||||| || |||||| |||| ||||| | ||||| Sbjct 2769429 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 2769488 Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158 ||| |||| |||||||||| ||| |||||||| ||||| || || ||| Sbjct 2769489 CCTCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAA 2769548 Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCAT 4216 |||||||| || || ||| | ||||| || | |||| | ||| | | | || | Sbjct 2769549 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TCTT 2769606 Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAG 4276 |||| | |||||| |||||||| ||||| | ||||||||||| ||||||| | | || Sbjct 2769607 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCAAAAATCAG 2769666 Query 4277 AAAACAGCAAACGTTGGAATCCAGAGAT 4304 || ||||||||| |||||||||||||| Sbjct 2769667 AATCCAGCAAACGCTGGAATCCAGAGAT 2769694 Score = 147 bits (162), Expect = 7e-32 Identities = 242/344 (70%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 |||||||||||||||||| | ||||| ||||||| || | || ||||||| | Sbjct 2768063 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCACCACTCGT 2768118 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||| ||||| |||| | ||| || ||||| ||||||||||||| || | || Sbjct 2768119 TCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGAT-TAAAGG 2768177 Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054 | || || || || | |||||| || |||||||||||| ||| || | Sbjct 2768178 CCAT-----GCCTCTGACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 2768231 Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114 ||||| ||||||||||| ||||||| || | ||||| ||||||||||| |||||| Sbjct 2768232 GACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAAC 2768291 Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174 ||||||| || | || ||| | || |||| | |||||||| ||||||| | | Sbjct 2768292 TACTGGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAG 2768351 Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 |||| | || | ||||| | ||| |||||||||||||| || Sbjct 2768352 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 2768395 Score = 141 bits (156), Expect = 3e-30 Identities = 245/354 (69%), Gaps = 3/354 (1%) Strand=Plus/Plus Query 1303 CCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCC 1362 |||||||| ||| | || || || || | || || | ||||| ||| || || |||| Sbjct 2766528 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 2766587 Query 1363 ACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATT 1422 || ||||| || || ||||| | ||||||||| |||| ||||||||| ||||| || | Sbjct 2766588 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 2766647 Query 1423 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGA 1482 | || || ||||||||||| ||||||||||| || |||||||| || | || ||| Sbjct 2766648 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 2766707 Query 1483 GCGCCAAGGCCATTCTGGGCGG--AAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATC 1540 || || |||||| |||| || || | | | | || || ||||| || || || Sbjct 2766708 CTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCG-GGGTTGATCAAAAATGTAAAGGTTC 2766766 Query 1541 GGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGAT 1600 | || || ||||| || || || | | ||| || | | | ||| | ||| | Sbjct 2766767 TGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGT 2766826 Query 1601 TGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654 ||| ||||||||||| ||| | || ||| || | || || |||| | ||||| Sbjct 2766827 TGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 2766880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010926139420