Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq42 127 6e-26 >seq42 Length=14527517 Score = 127 bits (140), Expect = 6e-26 Identities = 279/410 (68%), Gaps = 26/410 (6%) Strand=Plus/Plus Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028 ||| ||||| ||||| || ||| ||| ||||| | |||||||||| || | | || Sbjct 2768121 CACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATT---AAAGG 2768177 Query 3029 GCCTGCAGTCCAACA------CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACT 3082 | ||| || ||| ||||| || | | |||||| |||| ||| | |||| Sbjct 2768178 CCATGCC-TCTGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACT 2768235 Query 3083 TCAACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACT 3142 ||||| | ||||| ||||||| || | ||||| |||||||||||||||||| ||| Sbjct 2768236 TCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACT 2768295 Query 3143 GGGGCATGCGACCCAAAGCCATGCGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCA 3202 ||||||| |||| || || | ||||||| |||||||| || || |||||||||| Sbjct 2768296 GGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 2768355 Query 3203 CGACGTCGAACGGC---GAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCT 3259 | | | ||| |||||| | || |||||||| || || | ||||| | Sbjct 2768356 TGGAGGCAGCAGGCACAAAGACAA---TTGCCAATAACCTAACGTCAACCATCCAGATTT 2768412 Query 3260 TTGCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCA-AGAGGGCAGC 3315 |||| || | ||| | ||||| |||||| | | |||| || ||||| || Sbjct 2768413 TTGCAGATGACACATACCAGCTGCCATACGTGGTTGGAAATGC----CACCGAGGGGTGC 2768468 Query 3316 CTGCCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365 |||| |||||||| || || |||||| ||| |||||| | ||||| Sbjct 2768469 TTGCCCGCTTTTCCCGGTGATGTTTTTATGTGGCCTCAGTACTGGTACTG 2768518 Score = 125 bits (138), Expect = 2e-25 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1357 CCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCC 1416 |||||||| ||| | || || || || | || || | ||||| ||| || || |||| Sbjct 2766528 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 2766587 Query 1417 ACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATT 1476 || ||||| || || ||||| | |||||||| |||| ||||||||| ||||| || | Sbjct 2766588 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 2766647 Query 1477 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTAGAGA 1536 | || || ||||||||||| ||||||||||| || |||||||| || | |||||| Sbjct 2766648 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 2766707 Query 1537 GCGCCAAGGCCATCCTGGGCGG 1558 || || ||||| |||| || Sbjct 2766708 CTGCTAAAGCCATTTTGGGTGG 2766729 Score = 77.0 bits (84), Expect = 1e-10 Identities = 183/272 (67%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 4083 AGACATTTACTACCAGGGTCCCATTTGGGCCAAGATTCCTCATACCGATGGACACTTTCA 4142 |||||| || |||||| || |||||||| || |||||| | || ||||| | ||||| Sbjct 2769428 AGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCA 2769487 Query 4143 CCCCTCA-CCGCTGATTGGTGGGTTTGGGCTGAAACACCCGCCTCCTCAAATTTTTATCA 4201 || ||| || || || || | |||| ||||| || ||||| ||| | | Sbjct 2769488 GCC-TCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCTGCAGA 2769546 Query 4202 AGAACACCCCGGTACCTGCGAATCCTGCAACGACCTTCAGCTCTACTCCGGTAAACTCCT 4261 | || || || || ||||| | ||| | || |||||| || || | || || | Sbjct 2769547 AAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAGTCTT 2769606 Query 4262 TCATTACTCAGTACAGCACTGGCCAGGTGTCGGTGCAGATTGACTGGGAGATCCAGAAGG 4321 | |||| |||||| |||||| ||||| | ||| | ||||| |||||| | | || Sbjct 2769607 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAG--CAAAAATC 2769664 Query 4322 AGCGGTC--CAAACGCTGGAACCCCGAGGTCC 4351 || | |||||||||||| || ||| ||| Sbjct 2769665 AGAATCCAGCAAACGCTGGAATCCAGAGATCC 2769696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15142123745840