Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq42 159 1e-35 >seq42 Length=14527517 Score = 159 bits (176), Expect = 1e-35 Identities = 271/389 (70%), Gaps = 4/389 (1%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACA-CCATCTGGCTGTTTGGGCCGGCCACC 1345 ||||||||| | |||| ||| ||||| |||||||| | | | || || ||| Sbjct 2766494 GCTGGGCCCGGCGGGAGTTCAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACC 2766553 Query 1346 ACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTC 1405 || ||||||| | ||||| ||| || || |||| || ||||| || || ||||| | Sbjct 2766554 ACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGA 2766613 Query 1406 AACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGG 1465 |||||||| |||| ||||||||| |||||||| || || || ||||||||||| |||||| Sbjct 2766614 AACTGGACTAATGGGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGG 2766673 Query 1466 GAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG--CA 1523 ||||| || |||||||| || | || ||||| || || |||||| | || || | Sbjct 2766674 GAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCG 2766733 Query 1524 GCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGA 1583 || | | | | || || ||||| || || || | || || || || || || || Sbjct 2766734 GCCATGCG-GGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTAC 2766792 Query 1584 TCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGC 1643 | | ||| || | | | ||| | ||| |||| ||||||||||| ||| | || | Sbjct 2766793 TTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACTACCCTGGAAC 2766852 Query 1644 ACCAGCAGCCGTTGCAGGACCGGATGTTC 1672 | || | || ||| |||| | |||||| Sbjct 2766853 ATAAGGAACCTTTGGAGGAAAGAATGTTC 2766881 Score = 111 bits (122), Expect = 5e-21 Identities = 120/158 (76%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| || ||||||||||| |||| || | || |||||||||||||| ||||||| Sbjct 2768199 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 2768257 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 || | ||||| |||||||||||||||||| | ||||| || | || ||| | Sbjct 2768258 GAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGCTCG 2768317 Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 | ||||| | |||||||| ||||| |||||||||| Sbjct 2768318 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 2768355 Score = 107 bits (118), Expect = 6e-20 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106 |||| |||| | || || ||||| || |||||||| ||||||||| |||| ||||| | Sbjct 2769423 GATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAAT 2769482 Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166 ||||| || |||| ||||| |||| ||| ||| | || ||||| ||| || Sbjct 2769483 TTTCAGCCTCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCTG 2769542 Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226 ||||| || || || ||||| | ||||| |||| || | | || || Sbjct 2769543 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG 2769602 Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286 || || || | || || ||||| || || || | ||||||||||| ||||||| | Sbjct 2769603 TCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCAAAAA 2769662 Query 4287 AAAGAAAACAGCAAGCGCTGGAATCCCGA 4315 |||| |||||| ||||||||||| || Sbjct 2769663 TCAGAATCCAGCAAACGCTGGAATCCAGA 2769691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985326606460