Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq42 214 5e-52 >seq42 Length=14527517 Score = 214 bits (236), Expect = 5e-52 Identities = 251/338 (74%), Gaps = 1/338 (0%) Strand=Plus/Plus Query 1244 GACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 ||| |||||||||| ||||||| | ||||| |||||||||||||| ||||||||| || | Sbjct 2766543 GACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTT 2766602 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGA 1363 |||| || | |||||||| || | ||||||||| ||||| ||||| || || || ||| Sbjct 2766603 ATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACTGGGTAGATAAGATGG 2766662 Query 1364 TTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTC 1423 | || ||||||||||| || || |||||| ||| | || || | || || || ||| Sbjct 2766663 TGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTT 2766722 Query 1424 TGGGAGGATCTCGGGTG-AGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 |||| || || || | || || |||||||| |||| ||| || | || ||||| Sbjct 2766723 TGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCA 2766782 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACC 1542 ||||| || ||||||||||||| | | | |||| ||| | || ||||||| || Sbjct 2766783 ACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACT 2766842 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTT 1580 || | || |||||| | || |||||||| || ||||| Sbjct 2766843 ACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 2766880 Score = 118 bits (130), Expect = 3e-23 Identities = 308/468 (66%), Gaps = 10/468 (2%) Strand=Plus/Plus Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACC 2996 ||||| |||||||||||| | ||||| ||||||| | || ||| |||||| || Sbjct 2768063 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 2768121 Query 2997 ACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCC 3056 || |||| ||||| || ||| ||| ||||| | || ||||| | || |||| || Sbjct 2768122 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGG--CC 2768179 Query 3057 AGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGAC 3116 | | | | ||| || | ||||||||| |||| ||| | ||| Sbjct 2768180 AT----GCCTCTGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 2768234 Query 3117 TACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAAC 3176 | ||| ||||||| ||||||| || | |||||| || ||||||||||||||| || Sbjct 2768235 TTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTAC 2768294 Query 3177 TGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGTC 3236 ||||||||| | || || || | | | | | || ||||| || ||||| |||||| Sbjct 2768295 TGGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 2768354 Query 3237 ACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTT 3296 | || || || | || || | ||| ||||| || || ||||| | ||| Sbjct 2768355 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 2768414 Query 3297 GCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTT-CCC 3355 || || | ||||| ||||| ||||| | ||| || ||||| || ||| ||| Sbjct 2768415 GCAGATGACACATACCAGCTGCCATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCC 2768474 Query 3356 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403 || ||||| | ||| | | | | || |||||| |||||||||| Sbjct 2768475 GCTTTTCCC-GGTGATGTTTTTATGTGGCCTCAGTACTGGTACTGCAC 2768521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908528007580