Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq42 156 1e-34 >seq42 Length=14527517 Score = 156 bits (172), Expect = 1e-34 Identities = 244/354 (69%), Gaps = 1/354 (0%) Strand=Plus/Plus Query 1341 CCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTC 1400 || ||||| | || |||| ||||||||| | ||||| | ||||| ||| || || | | Sbjct 2766528 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 2766587 Query 1401 ACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNN 1460 | ||||| ||||||||||||| ||||||||||||| |||||| Sbjct 2766588 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 2766647 Query 1461 NNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAAC 1520 || || ||| |||| ||||||||||| |||||||||||||| || | || || Sbjct 2766648 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 2766707 Query 1521 CCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATGTAAATCCTCT 1579 | || || ||||| ||||| ||||| | | | || ||||||||||||||| ||| Sbjct 2766708 CTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCT 2766767 Query 1580 GTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTG 1639 || ||| | || | || || || |||| ||| |||| | | |||| ||||| Sbjct 2766768 GTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTT 2766827 Query 1640 GATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTC 1693 ||||||||| ||| ||| | ||||| || | || |||| || | |||||| Sbjct 2766828 GATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTTC 2766881 Score = 114 bits (126), Expect = 4e-22 Identities = 218/310 (70%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTC--TCGCCAAGAGACTGG 3082 |||||||| ||| | ||||| ||| | ||||| ||||||| || |||||| ||| Sbjct 2768216 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGA--CTGT 2768273 Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTT 3141 || | |||||||||||| ||||||| | | ||||| || | | | || || || Sbjct 2768274 CAGCGACTCATCAACAACTACTGGGG-CATCTGACCAAAGGCTCGTAGAATCAAAATTTT 2768332 Query 3142 CAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACC 3200 |||||| |||||||||||||||| | | | | | || | | ||| | |||| |||| Sbjct 2768333 CAACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACC 2768391 Query 3201 TCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGT-GATGGAT 3259 | || || ||||||| ||||| || ||| ||| |||| || ||||| | |||| Sbjct 2768392 TAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATACGTGGTTGGA- 2768450 Query 3260 GCAGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTA 3318 | | || ||||| ||||||| |||| ||| || || || ||| ||||||||| Sbjct 2768451 -AATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTGGCCTCAGTA 2768509 Query 3319 CGGGTACTGC 3328 | |||||||| Sbjct 2768510 CTGGTACTGC 2768519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905328065960