Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq42 302 1e-78 >seq42 Length=14527517 Score = 302 bits (334), Expect = 1e-78 Identities = 401/552 (73%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 1345 AGCAGCACTTGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAGACTATTT 1404 ||||||||| || || || ||||| |||||||| || ||||| | ||| || ||| | Sbjct 2766333 AGCAGCACTGGAGAACGCGCGAGCCGAAATGCTCCTGACAAAGTCGGCCGAAGGCTACCT 2766392 Query 1405 GATTGGAAAAGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAAATTCTGAAGTT 1464 | | || || ||||| |||||| || | || | | | |||| || | || | Sbjct 2766393 GCTAGGCAAGCTTCCAGTCGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGT 2766452 Query 1465 GAATAACTATAACCCTCAATATGTAGGGAGCGTCCTATGCGGATGGGTGAAAAGAGAATT 1524 |||| || |||| | | || || | ||||| | |||| | || || Sbjct 2766453 GAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGCTCGCTGGGCCCGGCGGGAGTT 2766512 Query 1525 CAACAAAAGAAAT-GCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAG 1583 |||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | ||| | Sbjct 2766513 CAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCG 2766572 Query 1584 CCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACT 1643 ||||||||||||| |||||| || || |||||||||| ||||||||||||| ||||| Sbjct 2766573 TGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACT 2766632 Query 1644 TCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCA 1703 | || || |||||||| || ||||| ||| | || ||||||||||| ||||| ||||||| Sbjct 2766633 TTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCA 2766692 Query 1704 ATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGATCAA 1762 |||| | || || || || ||||| || |||| ||||| || | | | ||||||||| Sbjct 2766693 GTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCGGGGTTGATCAA 2766752 Query 1763 AAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATACTGAT 1822 || ||||| || ||||| |||||||| || |||||| | ||||||||||||| || Sbjct 2766753 AAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATAT 2766812 Query 1823 ATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCTTTGGAGG 1880 | ||| | | || ||||| || ||||| ||||||| | ||| |||||||||| Sbjct 2766813 AAGTGTACTGTGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAA--CCTTTGGAGG 2766870 Query 1881 AAAGAATGTTCC 1892 |||||||||||| Sbjct 2766871 AAAGAATGTTCC 2766882 Score = 161 bits (178), Expect = 3e-36 Identities = 294/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCA 3316 || ||||||||||| |||| ||| | || |||||||||||||| ||||| | ||| Sbjct 2768206 GGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCC 2768264 Query 3317 AGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTC 3376 |||||| ||| |||||||||||||| | ||||| || |||| || || | | | || Sbjct 2768265 CAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGCTCGTAGAATC 2768324 Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAG--ACAAAGACTATTG 3434 || || ||||| | |||||||| || |||| | | || ||| |||||||| |||| Sbjct 2768325 AAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAG--CAGGCACAAAGACAATTG 2768382 Query 3435 CTAACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATG 3494 | || ||||| || || || |||||||| || | ||| | | |||||||||| || | Sbjct 2768383 CCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATACG 2768442 Query 3495 TTCTGGGCTCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGC 3554 | | || ||||| |||||| |||| | || ||| ||||| | | | || Sbjct 2768443 TGGTTGGAAATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTGGC 2768502 Query 3555 CCCAGTACGGCTACTGCACAATGCACACCA--ACCAGAGTGGAGCGAGATTC---AATGA 3609 | |||||| | |||||||| |||| | | | ||||| ||| | | || | | | Sbjct 2768503 CTCAGTACTGGTACTGCACTGTGCATATGAAGAGCAGAG-GGAAC-ACATCCCCTACTCC 2768560 Query 3610 CAGAAGTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAA 3669 | || || |||||| |||| ||||| ||||||||||||| | | || ||||| Sbjct 2768561 ACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTCGCATTGGCAATAA 2768620 Query 3670 TTT 3672 ||| Sbjct 2768621 TTT 2768623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16310102437140