Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq42 132 1e-27 >seq42 Length=14527517 Score = 132 bits (146), Expect = 1e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 3813 ATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATT 3872 ||| |||||| || | ||||| ||||||||||| |||||||| | || ||||| ||| Sbjct 2769424 ATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATT 2769483 Query 3873 TTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGA 3932 |||| ||| ||| | ||||| || | ||| | |||||||| || || ||||||||| Sbjct 2769484 TTCAGCCTCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCTGC 2769543 Query 3933 TCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTA 3992 |||||||| ||||| ||||| || ||||| | |||||| | || ||| | Sbjct 2769544 AGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAGT 2769603 Query 3993 GTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGA 4052 ||| |||| | | || || || || ||||| || ||||| |||||| | | Sbjct 2769604 CTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCAAAAAT 2769663 Query 4053 AAGAATCCTCCAAAAGATGGAATCCAGA 4080 ||||||| |||| | ||||||||||| Sbjct 2769664 CAGAATCCAGCAAACGCTGGAATCCAGA 2769691 Score = 102 bits (112), Expect = 2e-18 Identities = 198/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 ||||||| ||| | |||||||| ||||||| ||||||| |||| |||||| || Sbjct 2768217 CCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAG 2768276 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTC--AAAATCAAAGTCTTTA 2948 |||||||||||||| || |||||| | || ||||| ||| | ||||||| | || | Sbjct 2768277 CGACTCATCAACAACTACTGGGGCATCTGACC-AAAGG-CTCGTAGAATCAAAATTTTCA 2768334 Query 2949 ACGTCCAAGTCAAAGAAGTTA-CAACACAAGATTCAACGAAAACAATTGCCAACAATCTC 3007 || | ||||| || || || | | || | | || || ||||||||||| || || Sbjct 2768335 ACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGC-ACAAAGACAATTGCCAATAACCTA 2768393 Query 3008 ACCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGT 3067 || ||| | ||||| ||||| || || | ||| | | ||||| || | || | | Sbjct 2768394 ACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATACGTGGTTGGAAAT 2768453 Query 3068 GCTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGT 3113 || || | || || || | |||||| |||||| ||||||| Sbjct 2768454 GCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGT 2768499 Score = 91.5 bits (100), Expect = 4e-15 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1291 CCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCAAGCTATTGCAC 1350 |||||||| | || | || || || ||| |||| || | ||||| | |||||||| | Sbjct 2766528 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 2766587 Query 1351 ATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCCCTTCTGTAACT 1410 |||||| | | | || ||| || |||||||||| |||||||| ||| | ||| Sbjct 2766588 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 2766647 Query 1411 GTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAAAATGGTGGAGA 1470 | || || || | || ||||||||||| || |||||||| | ||||| || ||| Sbjct 2766648 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 2766707 Query 1471 CGGCTAAA 1478 | |||||| Sbjct 2766708 CTGCTAAA 2766715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14070143303140