Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq42 230 7e-57 >seq42 Length=14527517 Score = 230 bits (254), Expect = 7e-57 Identities = 335/471 (71%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 1216 CGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGC 1275 || |||||| ||| |||| | | ||| |||| || ||||| | |||||||| | Sbjct 2766411 CGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGTGAATCGGTACGACCCCGT 2766470 Query 1276 CTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACA-CCG 1334 || || | |||||| ||||| | ||| ||||||||| | ||| || Sbjct 2766471 CTTGGCAGCGAACATCCTAGCTCGCTGGGCCCGGCGGGAGTTCAACAAGTGCAACCGCCA 2766530 Query 1335 TCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACA 1394 ||||| ||||| |||| || || ||| ||||||| | ||||| |||||| || |||| Sbjct 2766531 TCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTG 2766590 Query 1395 CTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTG 1454 ||||||| ||||| ||||| | |||||||| |||| |||||||| || |||||||| | Sbjct 2766591 CTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACTGGG 2766650 Query 1455 TGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCG 1514 | || || ||| | |||||||||||||| ||||||||||||| || | || || || | Sbjct 2766651 TAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTG 2766710 Query 1515 CCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCAGAAATGTAAATCCTCTGTT 1573 | || ||||| |||| || || ||| |||| ||||| ||||||||| ||||| Sbjct 2766711 CTAAAGCCATTTTGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCTGTG 2766770 Query 1574 CAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGAT 1633 |||||||| | || ||||| || | || |||| | | | |||| ||||| ||| Sbjct 2766771 CAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGAT 2766830 Query 1634 GGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTC 1684 ||||| ||| ||| | ||||| || | || ||||||| | |||||| Sbjct 2766831 GGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTTC 2766881 Score = 197 bits (218), Expect = 4e-47 Identities = 239/323 (74%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 2989 CGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCA 3048 ||||||||| || ||||||||||| |||| ||| | ||||| ||| | ||||| |||| Sbjct 2768196 CGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCA 2768254 Query 3049 CTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTC 3108 |||||| |||| |||||| || ||||||||||||||||||||||| || |||| | | Sbjct 2768255 CTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGC 2768314 Query 3109 CCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCA 3167 | ||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| | Sbjct 2768315 TCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAA 2768373 Query 3168 CNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGC 3227 || ||||| ||||| || || ||| |||| | ||| | || ||| ||||||| Sbjct 2768374 AGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGC 2768433 Query 3228 TGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCT 3287 |||| ||||| || || || | |||||||| ||| |||| || || || | || | Sbjct 2768434 TGCCATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTT 2768493 Query 3288 TTACGCTGCCGCAGTACGGTTAC 3310 ||| | ||| |||||| | ||| Sbjct 2768494 TTATGTGGCCTCAGTACTGGTAC 2768516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14742131043340