Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq42 159 1e-35 >seq42 Length=14527517 Score = 159 bits (176), Expect = 1e-35 Identities = 271/389 (70%), Gaps = 4/389 (1%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACA-CCATCTGGCTGTTTGGGCCCGCCACC 1344 ||||||||| | ||||| ||| ||||| |||||||| | | | || || ||| Sbjct 2766494 GCTGGGCCCGGCGGGAGTTCAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACC 2766553 Query 1345 ACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTC 1404 ||| ||||||| | ||| | ||| || || |||| || ||||| || || ||||| | Sbjct 2766554 ACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGA 2766613 Query 1405 AACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGG 1464 |||||||| |||| ||||||||| ||||| || || || || ||||||||||| |||||| Sbjct 2766614 AACTGGACTAATGGGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGG 2766673 Query 1465 GAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG--CA 1522 ||||| || |||||||| || | || ||||| || || |||||| | || || | Sbjct 2766674 GAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCG 2766733 Query 1523 GCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGA 1582 || | | | | || || ||||| || || || | || || || || || || || Sbjct 2766734 GCCATGCG-GGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTAC 2766792 Query 1583 TCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGC 1642 | | ||| || | | | ||| | ||| |||| ||||||||||| ||| | || | Sbjct 2766793 TTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACTACCCTGGAAC 2766852 Query 1643 ACCAGCAGCCGTTGCAGGACCGGATGTTC 1671 | || | || ||| |||| | |||||| Sbjct 2766853 ATAAGGAACCTTTGGAGGAAAGAATGTTC 2766881 Score = 127 bits (140), Expect = 6e-26 Identities = 223/321 (69%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 3039 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3098 ||||||| || ||||||||||| |||| || | ||||| ||||||||||| ||||||| Sbjct 2768198 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACT 2768256 Query 3099 TCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGC 3158 || | ||||| |||||||||||||||||| ||||||| || | || ||| | Sbjct 2768257 GGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGCTC 2768316 Query 3159 TGCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGA 3218 | |||| | |||||||| || || |||||||||| | | | ||| | || Sbjct 2768317 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 2768376 Query 3219 CCATCGCTAATAACCTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGCTGC 3278 | || || |||||||| || || || ||| | || | || ||||||||||| Sbjct 2768377 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 2768436 Query 3279 CGTACGTCCTCGGCTCTGCGCACC-AGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTC 3337 | ||||| | || ||| |||| |||| ||| |||| | || || | || || || Sbjct 2768437 CATACGTGGTTGGAAATGC-CACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTT 2768495 Query 3338 ATGATTCCTCAGTACGGCTAC 3358 ||| ||||||||| | ||| Sbjct 2768496 ATGTGGCCTCAGTACTGGTAC 2768516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994926431320