Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq42 163 8e-37 >seq42 Length=14527517 Score = 163 bits (180), Expect = 8e-37 Identities = 229/320 (72%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 2941 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3000 ||||||| || ||||||||||| |||| || | ||||| ||||||||||| ||||||| Sbjct 2768198 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACT 2768256 Query 3001 TTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGAC 3060 || | ||||| |||||||||||||||||| ||||||| || | || ||| | Sbjct 2768257 GGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGCTC 2768316 Query 3061 TCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGA 3120 || |||| | |||||||| || || |||||||||| | || | |||||| |||| Sbjct 2768317 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 2768376 Query 3121 CCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGC 3180 | || ||||||||||| || ||||||||| | ||| | || |||||||||| Sbjct 2768377 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 2768436 Query 3181 CGTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCA 3240 | ||||| | || |||| | |||| ||| |||| | || || | || || || | Sbjct 2768437 CATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTA 2768496 Query 3241 TGATTCCCCAGTACGGCTAC 3260 || || |||||| | ||| Sbjct 2768497 TGTGGCCTCAGTACTGGTAC 2768516 Score = 154 bits (170), Expect = 4e-34 Identities = 248/354 (70%), Gaps = 3/354 (1%) Strand=Plus/Plus Query 1218 CCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCC 1277 |||||||| | | |||| || |||||| ||||||| | ||| | ||| || || |||| Sbjct 2766528 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 2766587 Query 1278 ACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATT 1337 || ||||| || || ||||| | |||||||| |||| ||||||||| |||||||| | Sbjct 2766588 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 2766647 Query 1338 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGT 1397 | || || ||||||||||| ||||||||||| || |||||||| || | || |||| Sbjct 2766648 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 2766707 Query 1398 CCGCCAAGGCCATTCTCGGCGG--CAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTC 1455 | || || |||||| | || || | || | | | | || || ||||| || || || Sbjct 2766708 CTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCG-GGGTTGATCAAAAATGTAAAGGTTC 2766766 Query 1456 CGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGAT 1515 | || || || || || || || | | ||| || | | | ||| | ||| | Sbjct 2766767 TGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGT 2766826 Query 1516 TGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTT 1569 ||| ||||||||||| ||| | || || || | ||| | |||| | ||||| Sbjct 2766827 TGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 2766880 Score = 98.7 bits (108), Expect = 3e-17 Identities = 185/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016 ||| | || || ||||| || || ||||| || |||||| |||| || ||||| || || Sbjct 2769429 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 2769488 Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076 || ||| ||||| |||| ||| |||||||| || || ||| ||| || Sbjct 2769489 CCTCATCCTAACATGGGAGGCTGTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAA 2769548 Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCT 4133 || || || || ||||| || ||||| | |||||| | || || | || ||| Sbjct 2769549 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCT 2769605 Query 4134 TTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAG 4193 || || | || || ||| || ||||| | ||||||||||| ||||||| | Sbjct 2769606 TTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCAAAAATCA 2769665 Query 4194 GAAAACAGCAAGCGCTGGAACCCCGAGATCC 4224 ||| |||||| |||||||| || ||||||| Sbjct 2769666 GAATCCAGCAAACGCTGGAATCCAGAGATCC 2769696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945345579960