Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq42 228 2e-56 >seq42 Length=14527517 Score = 228 bits (252), Expect = 2e-56 Identities = 254/338 (75%), Gaps = 1/338 (0%) Strand=Plus/Plus Query 1244 GACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 |||||||||||||| ||||||| | ||||| |||||||||||||| ||||||||| || | Sbjct 2766543 GACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTT 2766602 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGA 1363 |||| || | |||||||| || | ||||||||| ||||| ||||| || || |||||| Sbjct 2766603 ATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACTGGGTAGATAAGATGG 2766662 Query 1364 TTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTC 1423 | || |||||||| || || || |||||| || | || || | |||||||| ||| Sbjct 2766663 TGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTT 2766722 Query 1424 TGGGAGGATCTCGGGTG-AGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 |||| || || || | || || |||||||| |||| ||| || | || ||||| Sbjct 2766723 TGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCA 2766782 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACT 1542 ||||| || ||||||||||||| | | | |||| ||| | || ||||||| ||| Sbjct 2766783 ACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACT 2766842 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTT 1580 || | || |||||| | || |||||||| || ||||| Sbjct 2766843 ACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 2766880 Score = 109 bits (120), Expect = 2e-20 Identities = 285/431 (66%), Gaps = 13/431 (3%) Strand=Plus/Plus Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984 ||||| |||||||||||| | ||||| ||||||| | || ||| || || || Sbjct 2768063 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 2768121 Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044 || |||| ||||| | ||| ||| ||||| | | ||||||| ||| |||| | Sbjct 2768122 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGCCAT 2768181 Query 3045 GGAG--GAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTTG 3102 | || | || | | ||| || | ||||||||| |||| ||| | | Sbjct 2768182 GCCTCTGACATGTCCGCC--------TACTTGGGTTACAGCACCCC-TGGGCCTACCTCG 2768232 Query 3103 ACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAACA 3162 ||| |||| ||||||| ||||||| |||| |||||| || ||||||||||||||| Sbjct 2768233 ACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAACT 2768292 Query 3163 ACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAAG 3222 ||||||||||| |||| || || | | | | | || ||||| || ||||| || | Sbjct 2768293 ACTGGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGG 2768352 Query 3223 TCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTCT 3282 ||| | || || | || || ||||| ||||| || || |||| | | Sbjct 2768353 TCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTT 2768412 Query 3283 TTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTT-C 3341 |||| || | ||||||||||| ||||| | ||| || || ||||| ||| | Sbjct 2768413 TTGCAGATGACACATACCAGCTGCCATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGC 2768472 Query 3342 CCGCCGTTCCC 3352 |||| ||||| Sbjct 2768473 CCGCTTTTCCC 2768483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14870128708140