Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq42 165 2e-37 >seq42 Length=14527517 Score = 165 bits (182), Expect = 2e-37 Identities = 235/322 (73%), Gaps = 9/322 (3%) Strand=Plus/Plus Query 2836 TACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTT 2895 ||||| ||||||||||| ||| ||| ||| |||| ||||| ||||||| ||||||| Sbjct 2768200 TACTTGGGTTACAGCACCCCT-GGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGG 2768258 Query 2896 TCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTC 2955 |||| ||||| ||||| |||||||||||| ||||||||||| | || || ||||| Sbjct 2768259 AGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCTGACCAAA--GGCTC 2768316 Query 2956 --CACTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGA 3013 | || | |||||||| || || |||||||||| | | | | ||||| | || Sbjct 2768317 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 2768376 Query 3014 CCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGCGGA-CACGGAGTACCAGCTC 3072 | || ||||| ||||| || ||||| ||| | ||||| || || | |||||||| Sbjct 2768377 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTG 2768435 Query 3073 CCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTG-CCGCCGTTCCCGGCGGACGTCTT 3131 || |||||| | || || ||| |||||| ||| || |||| ||||||| || || || Sbjct 2768436 CCATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGG-TGATGTTTT 2768494 Query 3132 CATGCTGCCGCAGTACGCGTAC 3153 ||| ||| |||||| |||| Sbjct 2768495 TATGTGGCCTCAGTACTGGTAC 2768516 Score = 111 bits (122), Expect = 4e-21 Identities = 171/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 1089 TGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCT-GCTCGGCTGGTGCCGCACCGGC 1147 |||| | |||||||||| || || | | | | || ||||| |||| ||| | Sbjct 2766452 TGAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGCTCG-CTGGGCCCGGCGGGAG 2766510 Query 1148 TTCGGCAAGCGCAACA-CCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCT 1206 ||| |||| ||||| || ||||| ||| | | || || || ||| ||||||| | | | Sbjct 2766511 TTCAACAAGTGCAACCGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCAT 2766570 Query 1207 CGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAA 1266 || ||||| || || | ||||| || || ||||| | |||||||| || | ||| Sbjct 2766571 CGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAA 2766630 Query 1267 CTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||| || ||||| ||||| || || |||||| | || ||||||||||| || |||||||| Sbjct 2766631 CTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 2766690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602951826620