Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq42 105 2e-19 >seq42 Length=14527517 Score = 105 bits (116), Expect = 2e-19 Identities = 209/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954 ||||||||||||| | ||||| ||| ||||||| ||||||| |||| |||||| || Sbjct 2768216 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCA 2768275 Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014 ||||||| |||||| | || || ||||| | | | | |||| | ||||| Sbjct 2768276 GCGACTCATCAACAACTACTGGGGCATCTGACCAAAGGCTCGTAGAATCAAAATTTTCAA 2768335 Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074 ||| || || ||||| ||| | || || || || || ||||| || || || Sbjct 2768336 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 2768395 Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133 ||| | ||| | ||||| || || | ||||||| || ||||| | ||||||| Sbjct 2768396 GTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGCCATACGTGGTTGGAAATG 2768454 Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193 |||| |||| || || | ||||| | ||| || ||| || |||||||||| | | Sbjct 2768455 CCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTGGCCTCAGTACTGGT 2768514 Query 3194 ACTGTAC 3200 |||| || Sbjct 2768515 ACTGCAC 2768521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14575734079100