Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015586.1
Length=5819
Score E
Sequences producing significant alignments: (Bits) Value
seq10043 500 3e-138
>seq10043
Length=66076
Score = 500 bits (554), Expect = 3e-138
Identities = 333/370 (90%), Gaps = 0/370 (0%)
Strand=Plus/Plus
Query 4468 GCCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGG 4527
|||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||
Sbjct 42606 GCCGGGGTGTAGGGGCGGCGCCCCTACGGAAGCGCCTCACACGCGCTGGCGGCGTTTCGG 42665
Query 4528 CCCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGA 4587
||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||
Sbjct 42666 CCCCGGTACCGGTAGGACTGCCGCGGGCGGCTCGGCGTCGGGGCCAGCCATCGCCATCGA 42725
Query 4588 TGACCGCCTTTCTCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTT 4647
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42726 TGACCGCTTTTCCCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTT 42785
Query 4648 GAAGGACAAGGGTTTCCGTGTTTTGCCGTTTGCGCGGCCGCTCTCCATCATCCGCCGCCA 4707
|||||||||||||||||| | |||||| | |||||||||||||||||||| || |||||
Sbjct 42786 GAAGGACAAGGGTTTCCGGGGCTTGCCGATCGCGCGGCCGCTCTCCATCATTCGGCGCCA 42845
Query 4708 TTCCTGCGCCTGCGCAGCAGTGAGCGACAGCCAGGCCAGATCTTCGGGCAGCAACTCGCG 4767
||||||||| || ||||| ||||||| |||||| || ||||| | || || ||||||
Sbjct 42846 TTCCTGCGCTTGTGCAGCGGTGAGCGCCAGCCATGCGAGATCCTGCGGTTCCAGCTCGCG 42905
Query 4768 GCCTTCGGGTGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTTAG 4827
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 42906 ACCCTCGGGCGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTCAG 42965
Query 4828 GTTCCGATCA 4837
|||||||||
Sbjct 42966 TTTCCGATCA 42975
Score = 208 bits (230), Expect = 3e-50
Identities = 412/601 (69%), Gaps = 13/601 (2%)
Strand=Plus/Plus
Query 5003 CTACCAGCGCGACGACCGCAGCCGCCGCGCCCATTCGGTCCAGCATCAACCGCCAGAGCG 5062
|||||||||| | || || || |||||| || | ||||| |||| | ||| | ||
Sbjct 35837 CTACCAGCGCCAACACTGCGGCGACCGCGCTCAACCTGTCCAACATCGATTTCCACATCG 35896
Query 5063 CACGTTCGGTTGCCGTCGTTGCGCGCTCTGCATGAATCATGGCGATCCAAGTCGGGCCAT 5122
| || |||| || | | ||||||| | || || |||| | ||| ||||
Sbjct 35897 CGCGCTCGGCTGGGGATGCTGCGCGCNNNNNNNNNNCC-TGCCG-TCCATGCCGGTCCAT 35954
Query 5123 CGAGCTTCGCCAGCGCGCAAATTTGCGCAATTCGTTCATCTGAGAGCGGCTTCTCGCCCG 5182
| ||||| |||| ||||||| ||||||||||| ||||| | || ||| ||| | ||
Sbjct 35955 CCAGCTTTGCCATGGCGCAAAGCTGCGCAATTCGCTCATCAGGGATCGGATTCCGGGCCT 36014
Query 5183 CGCGAGCCTTCGACAGCAGCTGC-CTCTGAATTCCCAGTCGAGCCGCCAAAGCGTTGTCT 5241
|| ||||| | | | || | | | |||| || || ||||| ||||||
Sbjct 36015 GTCGCCAATTCGAGACGA-CGGCGCGCGTGACCCCCATGCGCTGAGCTAAAGCATTGTCT 36073
Query 5242 GACGGGATTCCCGTGCGTTCGCGGGCGGCATCGAGCAGTTCACCTACGGCGGTCATGGTT 5301
|| |||| || | | ||||| |||||||| | |||||| ||||
Sbjct 36074 GAAGGGAGATTTGTTCCGACACGGGCTTGGTCGAGCAGCTGGTTGACGGCGTCCATGTAC 36133
Query 5302 TCCTCTTGGTTGACAACGTGTGGTCCTTTTAGATTACATGCTCCGCGTGGTCCAGATGGA 5361
| | ||||||| |||| || | ||||| || ||| | ||| |
Sbjct 36134 ACGATTCCGTTGACAGGGTGTATTCGGAGAACTATACATCGGCCCCGTATGCGGGATCGC 36193
Query 5362 CCGCACCCGCCAACGGCACCCCAAGGCCGCTGGCGGGTTTCCTTGGGG-CTTGGGGTAGG 5420
| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 36194 ATACGCCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCCCTTGGGGGCTTGGGGTAGG 36253
Query 5421 GGAACAGGGATGATCGATCCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTG 5480
|||| |||||||||||||||| ||||| |||||| ||||||||| | ||||||||||||
Sbjct 36254 GGAAGAGGGATGATCGATCCGTTCATTGCCTTCGTGCTGCTGGCGGTCATCGTGGCCGTT 36313
Query 5481 TCCATTGGCGGCGCTCGCATCGTTTCGTGGTTGCTCGACCGGCGTGAGTACACCGCCGCG 5540
|| |||||| |||| |||||||||||| |||||||||||| | | | ||| ||
Sbjct 36314 TCGATTGGCAGCGCCAAACTCGTTTCGTGGTGCTTCGACCGGCGTGGGGAGTCTGCC-CG 36372
Query 5541 CAGCAGCTG--CGCGAAGC--CCAGGTCATCGCACTCGCGCGGGCCGAGATTGCGGCCAC 5596
| || || |||||||| ||| || |||| | || || ||||| | || |||||
Sbjct 36373 TCGTAG-TGCACGCGAAGCAGCCA--TCGTCGCCCAGGCACGCGCCGAACTGGCCGCCAC 36429
Query 5597 G 5597
|
Sbjct 36430 G 36430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 18505751456040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |