Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq10043 500 3e-138 >seq10043 Length=66076 Score = 500 bits (554), Expect = 3e-138 Identities = 333/370 (90%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 4468 GCCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGG 4527 |||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||| Sbjct 42606 GCCGGGGTGTAGGGGCGGCGCCCCTACGGAAGCGCCTCACACGCGCTGGCGGCGTTTCGG 42665 Query 4528 CCCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGA 4587 ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||| Sbjct 42666 CCCCGGTACCGGTAGGACTGCCGCGGGCGGCTCGGCGTCGGGGCCAGCCATCGCCATCGA 42725 Query 4588 TGACCGCCTTTCTCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTT 4647 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42726 TGACCGCTTTTCCCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTT 42785 Query 4648 GAAGGACAAGGGTTTCCGTGTTTTGCCGTTTGCGCGGCCGCTCTCCATCATCCGCCGCCA 4707 |||||||||||||||||| | |||||| | |||||||||||||||||||| || ||||| Sbjct 42786 GAAGGACAAGGGTTTCCGGGGCTTGCCGATCGCGCGGCCGCTCTCCATCATTCGGCGCCA 42845 Query 4708 TTCCTGCGCCTGCGCAGCAGTGAGCGACAGCCAGGCCAGATCTTCGGGCAGCAACTCGCG 4767 ||||||||| || ||||| ||||||| |||||| || ||||| | || || |||||| Sbjct 42846 TTCCTGCGCTTGTGCAGCGGTGAGCGCCAGCCATGCGAGATCCTGCGGTTCCAGCTCGCG 42905 Query 4768 GCCTTCGGGTGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTTAG 4827 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 42906 ACCCTCGGGCGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTCAG 42965 Query 4828 GTTCCGATCA 4837 ||||||||| Sbjct 42966 TTTCCGATCA 42975 Score = 208 bits (230), Expect = 3e-50 Identities = 412/601 (69%), Gaps = 13/601 (2%) Strand=Plus/Plus Query 5003 CTACCAGCGCGACGACCGCAGCCGCCGCGCCCATTCGGTCCAGCATCAACCGCCAGAGCG 5062 |||||||||| | || || || |||||| || | ||||| |||| | ||| | || Sbjct 35837 CTACCAGCGCCAACACTGCGGCGACCGCGCTCAACCTGTCCAACATCGATTTCCACATCG 35896 Query 5063 CACGTTCGGTTGCCGTCGTTGCGCGCTCTGCATGAATCATGGCGATCCAAGTCGGGCCAT 5122 | || |||| || | | ||||||| | || || |||| | ||| |||| Sbjct 35897 CGCGCTCGGCTGGGGATGCTGCGCGCNNNNNNNNNNCC-TGCCG-TCCATGCCGGTCCAT 35954 Query 5123 CGAGCTTCGCCAGCGCGCAAATTTGCGCAATTCGTTCATCTGAGAGCGGCTTCTCGCCCG 5182 | ||||| |||| ||||||| ||||||||||| ||||| | || ||| ||| | || Sbjct 35955 CCAGCTTTGCCATGGCGCAAAGCTGCGCAATTCGCTCATCAGGGATCGGATTCCGGGCCT 36014 Query 5183 CGCGAGCCTTCGACAGCAGCTGC-CTCTGAATTCCCAGTCGAGCCGCCAAAGCGTTGTCT 5241 || ||||| | | | || | | | |||| || || ||||| |||||| Sbjct 36015 GTCGCCAATTCGAGACGA-CGGCGCGCGTGACCCCCATGCGCTGAGCTAAAGCATTGTCT 36073 Query 5242 GACGGGATTCCCGTGCGTTCGCGGGCGGCATCGAGCAGTTCACCTACGGCGGTCATGGTT 5301 || |||| || | | ||||| |||||||| | |||||| |||| Sbjct 36074 GAAGGGAGATTTGTTCCGACACGGGCTTGGTCGAGCAGCTGGTTGACGGCGTCCATGTAC 36133 Query 5302 TCCTCTTGGTTGACAACGTGTGGTCCTTTTAGATTACATGCTCCGCGTGGTCCAGATGGA 5361 | | ||||||| |||| || | ||||| || ||| | ||| | Sbjct 36134 ACGATTCCGTTGACAGGGTGTATTCGGAGAACTATACATCGGCCCCGTATGCGGGATCGC 36193 Query 5362 CCGCACCCGCCAACGGCACCCCAAGGCCGCTGGCGGGTTTCCTTGGGG-CTTGGGGTAGG 5420 | ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 36194 ATACGCCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCCCTTGGGGGCTTGGGGTAGG 36253 Query 5421 GGAACAGGGATGATCGATCCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTG 5480 |||| |||||||||||||||| ||||| |||||| ||||||||| | |||||||||||| Sbjct 36254 GGAAGAGGGATGATCGATCCGTTCATTGCCTTCGTGCTGCTGGCGGTCATCGTGGCCGTT 36313 Query 5481 TCCATTGGCGGCGCTCGCATCGTTTCGTGGTTGCTCGACCGGCGTGAGTACACCGCCGCG 5540 || |||||| |||| |||||||||||| |||||||||||| | | | ||| || Sbjct 36314 TCGATTGGCAGCGCCAAACTCGTTTCGTGGTGCTTCGACCGGCGTGGGGAGTCTGCC-CG 36372 Query 5541 CAGCAGCTG--CGCGAAGC--CCAGGTCATCGCACTCGCGCGGGCCGAGATTGCGGCCAC 5596 | || || |||||||| ||| || |||| | || || ||||| | || ||||| Sbjct 36373 TCGTAG-TGCACGCGAAGCAGCCA--TCGTCGCCCAGGCACGCGCCGAACTGGCCGCCAC 36429 Query 5597 G 5597 | Sbjct 36430 G 36430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18505751456040