Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq10043 286 2e-73 >seq10043 Length=66076 Score = 286 bits (316), Expect = 2e-73 Identities = 289/371 (78%), Gaps = 19/371 (5%) Strand=Plus/Plus Query 6639 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCCTCACACGCGCTGGTAAGGTCTCGGC 6698 ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 42607 CCGGGGTGTAGGGGCGGCGCCCCTACGGAAGCGCCTCACACGCGCTGGCGGCGTTTCGGC 42666 Query 6699 CCCGGCGCCGGCAGGACACCCGCAACAGGATCGGCGTCAGGACCAGCCATCACCGTGGAA 6758 ||||| |||| ||||| |||| || |||||||| || ||||||||| || | || Sbjct 42667 CCCGGTACCGGTAGGACTGCCGCGGGCGGCTCGGCGTCGGGGCCAGCCATCGCCATCGAT 42726 Query 6759 GACCGCTTTGCGCGGCGTTGTGCGA---CCTCGGCCAGGT---CAACGATGCCCGC---- 6808 ||||||||| | ||||| ||||| | | |||| |||| | ||| || | || Sbjct 42727 GACCGCTTTTCCCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTTG 42786 Query 6809 ACGCCCGAATGG---CCG----TTTCTGACCACCTCGGGCAATCTCCATCATCCGGCGCC 6861 | | | || || ||| || | || | | ||| | |||||||||| ||||||| Sbjct 42787 AAGGAC-AAGGGTTTCCGGGGCTTGCCGATCGCG-CGGCCGCTCTCCATCATTCGGCGCC 42844 Query 6862 ATTCCTGCGCCTGTGCGGCCAGCAGGGACAGCCATGCAAGGTCCTGCGGTTCCAGCTCGC 6921 |||||||||| ||||| || || | ||||||||| || ||||||||||||||||||| Sbjct 42845 ATTCCTGCGCTTGTGCAGCGGTGAGCGCCAGCCATGCGAGATCCTGCGGTTCCAGCTCGC 42904 Query 6922 GGCCTTCGGGGGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAGGGGCCGGTTA 6981 | || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 42905 GACCCTCGGGCGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTCA 42964 Query 6982 GGTTGCGATCA 6992 | || |||||| Sbjct 42965 GTTTCCGATCA 42975 Score = 147 bits (162), Expect = 1e-31 Identities = 413/616 (67%), Gaps = 36/616 (6%) Strand=Plus/Plus Query 89 CTACCAGCGCGACGACCGCAGCCGCCGCGCTCATTCTGTCCAGCATGAGGCGCCAGAGGG 148 |||||||||| | || || || ||||||||| ||||||| ||| ||| | | Sbjct 35837 CTACCAGCGCCAACACTGCGGCGACCGCGCTCAACCTGTCCAACATCGATTTCCACATCG 35896 Query 149 CCCGCTCGGTTGCCGACGTGGCGCGCTCGGCATGGATCATCGCGATCCAGGTGGGGCCGT 208 | ||||||| || || | |||||| | | || |||| | || || | Sbjct 35897 CGCGCTCGGCTGGGGATGCTGCGCGCNNNNNNNNNNCCTGC-CG-TCCATGCCGGTCCAT 35954 Query 209 CCAGCTTCGCAAGGGCGCAAATCTGCGCAATTCGCTCATCGGCCAGCGGCGTATCGCCTT 268 ||||||| || | |||||||| |||||||||||||||||| | | ||| | | | | Sbjct 35955 CCAGCTTTGCCATGGCGCAAAGCTGCGCAATTCGCTCATCAGGGATCGGATTCCGGGCCT 36014 Query 269 TCCTCCAG--CGGGACACCAGCGACCGGGTCACGGTCAGCCTTTCAGCCAAAGCCATATC 326 | ||| || ||| | ||| || || || || | | ||| ||||| | || Sbjct 36015 GTCGCCAATTCGAGACGACGGCG--CGCGTGACCCCCATGCGCTGAGCTAAAGCATTGTC 36072 Query 327 GGACGCGAGATTCAAGCGAATTTTCACG----TTGTCAAGTAGTTCGTTGACGGCGGTCA 382 || | |||||| | | |||| | ||| || || | |||||||||| || Sbjct 36073 TGAAGGGAGATTTGTTCCGA----CACGGGCTTGGTCGAGCAGCTGGTTGACGGCGTCCA 36128 Query 383 TGGCGGCTCCAGTTGATCGATCAGTTGACACG-TGTTTCCCGATCAGTTTACATGCGCCT 441 || | || ||| || ||||||| | ||| | | || | | ||||| ||| Sbjct 36129 TG-----TACAC--GAT---TCCGTTGACAGGGTGTATTCGGAGAACTATACATCGGCCC 36178 Query 442 CGT-TGAGTGATCACTCAACACCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTT 500 ||| || | |||| | | | ||||||||||||||||||||||||||||||||||| ||| Sbjct 36179 CGTATGCGGGATCGCATA-CGCCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCCCTT 36237 Query 501 -GGGGCTTGGGGCAGGGGATCACGGATGTTCGACGCCATCTCAT--CCTTCGCGCTGCTG 557 ||||||||||| |||||| | ||||| |||| || | |||| |||||| ||||||| Sbjct 36238 GGGGGCTTGGGGTAGGGGAAGAGGGATGATCGA-TCCGT-TCATTGCCTTCGTGCTGCTG 36295 Query 558 GGAGCCATTGCGGCTATCTCCATTGGTGCCGCTCGTATCGTTTCGTGGCTGC-TCGACCG 616 | | ||| | ||| | || ||||| ||| ||||||||||| ||| ||||||| Sbjct 36296 GCGGTCATCGTGGCCGTTTCGATTGGCAGCGCCAAACTCGTTTCGTGG-TGCTTCGACCG 36354 Query 617 GCGTGACTACACCGCCTCGCAGCAGT-CACGCGAAGCCGAGGTCATCGCACTCGCAGAGG 675 ||||| | | ||| || | ||| |||||||||| | || |||| | ||| | Sbjct 36355 GCGTGGGGAGTCTGCC-CGTCGTAGTGCACGCGAAGCAGCCATCGTCGCCCAGGCACGCG 36413 Query 676 CGGAGATTGCCGCCAC 691 | || | |||||||| Sbjct 36414 CCGAACTGGCCGCCAC 36429 Score = 116 bits (128), Expect = 2e-22 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 957 TCCTCAGCGATCCGCTTGTTGTCGCCGTGCTGGGCGGCGTGCTGCTTACCGGCCTCTATT 1016 |||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 36496 TCCTGCGCGATCCGTTTGTTGCCGCTGTGCTGGGCGGCGTGCTGCTTACCGGCCTCTATT 36555 Query 1017 GGTCGCTGGTGTTCGCCCTGCG 1038 ||||||||||||||| ||||| Sbjct 36556 GGTCGCTGGTGTTCGTGCTGCG 36577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22501787241908