Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021569.1
Length=7069
Score E
Sequences producing significant alignments: (Bits) Value
seq10043 286 2e-73
>seq10043
Length=66076
Score = 286 bits (316), Expect = 2e-73
Identities = 289/371 (78%), Gaps = 19/371 (5%)
Strand=Plus/Plus
Query 6639 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCCTCACACGCGCTGGTAAGGTCTCGGC 6698
||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 42607 CCGGGGTGTAGGGGCGGCGCCCCTACGGAAGCGCCTCACACGCGCTGGCGGCGTTTCGGC 42666
Query 6699 CCCGGCGCCGGCAGGACACCCGCAACAGGATCGGCGTCAGGACCAGCCATCACCGTGGAA 6758
||||| |||| ||||| |||| || |||||||| || ||||||||| || | ||
Sbjct 42667 CCCGGTACCGGTAGGACTGCCGCGGGCGGCTCGGCGTCGGGGCCAGCCATCGCCATCGAT 42726
Query 6759 GACCGCTTTGCGCGGCGTTGTGCGA---CCTCGGCCAGGT---CAACGATGCCCGC---- 6808
||||||||| | ||||| ||||| | | |||| |||| | ||| || | ||
Sbjct 42727 GACCGCTTTTCCCGGCGATGTGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGTTG 42786
Query 6809 ACGCCCGAATGG---CCG----TTTCTGACCACCTCGGGCAATCTCCATCATCCGGCGCC 6861
| | | || || ||| || | || | | ||| | |||||||||| |||||||
Sbjct 42787 AAGGAC-AAGGGTTTCCGGGGCTTGCCGATCGCG-CGGCCGCTCTCCATCATTCGGCGCC 42844
Query 6862 ATTCCTGCGCCTGTGCGGCCAGCAGGGACAGCCATGCAAGGTCCTGCGGTTCCAGCTCGC 6921
|||||||||| ||||| || || | ||||||||| || |||||||||||||||||||
Sbjct 42845 ATTCCTGCGCTTGTGCAGCGGTGAGCGCCAGCCATGCGAGATCCTGCGGTTCCAGCTCGC 42904
Query 6922 GGCCTTCGGGGGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAGGGGCCGGTTA 6981
| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 42905 GACCCTCGGGCGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAAGGGCCGGTCA 42964
Query 6982 GGTTGCGATCA 6992
| || ||||||
Sbjct 42965 GTTTCCGATCA 42975
Score = 147 bits (162), Expect = 1e-31
Identities = 413/616 (67%), Gaps = 36/616 (6%)
Strand=Plus/Plus
Query 89 CTACCAGCGCGACGACCGCAGCCGCCGCGCTCATTCTGTCCAGCATGAGGCGCCAGAGGG 148
|||||||||| | || || || ||||||||| ||||||| ||| ||| | |
Sbjct 35837 CTACCAGCGCCAACACTGCGGCGACCGCGCTCAACCTGTCCAACATCGATTTCCACATCG 35896
Query 149 CCCGCTCGGTTGCCGACGTGGCGCGCTCGGCATGGATCATCGCGATCCAGGTGGGGCCGT 208
| ||||||| || || | |||||| | | || |||| | || || |
Sbjct 35897 CGCGCTCGGCTGGGGATGCTGCGCGCNNNNNNNNNNCCTGC-CG-TCCATGCCGGTCCAT 35954
Query 209 CCAGCTTCGCAAGGGCGCAAATCTGCGCAATTCGCTCATCGGCCAGCGGCGTATCGCCTT 268
||||||| || | |||||||| |||||||||||||||||| | | ||| | | | |
Sbjct 35955 CCAGCTTTGCCATGGCGCAAAGCTGCGCAATTCGCTCATCAGGGATCGGATTCCGGGCCT 36014
Query 269 TCCTCCAG--CGGGACACCAGCGACCGGGTCACGGTCAGCCTTTCAGCCAAAGCCATATC 326
| ||| || ||| | ||| || || || || | | ||| ||||| | ||
Sbjct 36015 GTCGCCAATTCGAGACGACGGCG--CGCGTGACCCCCATGCGCTGAGCTAAAGCATTGTC 36072
Query 327 GGACGCGAGATTCAAGCGAATTTTCACG----TTGTCAAGTAGTTCGTTGACGGCGGTCA 382
|| | |||||| | | |||| | ||| || || | |||||||||| ||
Sbjct 36073 TGAAGGGAGATTTGTTCCGA----CACGGGCTTGGTCGAGCAGCTGGTTGACGGCGTCCA 36128
Query 383 TGGCGGCTCCAGTTGATCGATCAGTTGACACG-TGTTTCCCGATCAGTTTACATGCGCCT 441
|| | || ||| || ||||||| | ||| | | || | | ||||| |||
Sbjct 36129 TG-----TACAC--GAT---TCCGTTGACAGGGTGTATTCGGAGAACTATACATCGGCCC 36178
Query 442 CGT-TGAGTGATCACTCAACACCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTT 500
||| || | |||| | | | ||||||||||||||||||||||||||||||||||| |||
Sbjct 36179 CGTATGCGGGATCGCATA-CGCCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCCCTT 36237
Query 501 -GGGGCTTGGGGCAGGGGATCACGGATGTTCGACGCCATCTCAT--CCTTCGCGCTGCTG 557
||||||||||| |||||| | ||||| |||| || | |||| |||||| |||||||
Sbjct 36238 GGGGGCTTGGGGTAGGGGAAGAGGGATGATCGA-TCCGT-TCATTGCCTTCGTGCTGCTG 36295
Query 558 GGAGCCATTGCGGCTATCTCCATTGGTGCCGCTCGTATCGTTTCGTGGCTGC-TCGACCG 616
| | ||| | ||| | || ||||| ||| ||||||||||| ||| |||||||
Sbjct 36296 GCGGTCATCGTGGCCGTTTCGATTGGCAGCGCCAAACTCGTTTCGTGG-TGCTTCGACCG 36354
Query 617 GCGTGACTACACCGCCTCGCAGCAGT-CACGCGAAGCCGAGGTCATCGCACTCGCAGAGG 675
||||| | | ||| || | ||| |||||||||| | || |||| | ||| |
Sbjct 36355 GCGTGGGGAGTCTGCC-CGTCGTAGTGCACGCGAAGCAGCCATCGTCGCCCAGGCACGCG 36413
Query 676 CGGAGATTGCCGCCAC 691
| || | ||||||||
Sbjct 36414 CCGAACTGGCCGCCAC 36429
Score = 116 bits (128), Expect = 2e-22
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 957 TCCTCAGCGATCCGCTTGTTGTCGCCGTGCTGGGCGGCGTGCTGCTTACCGGCCTCTATT 1016
|||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 36496 TCCTGCGCGATCCGTTTGTTGCCGCTGTGCTGGGCGGCGTGCTGCTTACCGGCCTCTATT 36555
Query 1017 GGTCGCTGGTGTTCGCCCTGCG 1038
||||||||||||||| |||||
Sbjct 36556 GGTCGCTGGTGTTCGTGCTGCG 36577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22501787241908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |