Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq11495 163 8e-37 >seq11495 Length=911852 Score = 163 bits (180), Expect = 8e-37 Identities = 260/372 (70%), Gaps = 1/372 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347 ||||| |||| | || |||||||| | | | ||||| || ||| | ||||| |||| Sbjct 676146 AGTTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACA 676205 Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407 ||| |||||| || ||||| |||||| || || || || | ||||||||| ||||||| Sbjct 676206 TCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGA 676265 Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467 ||||||| |||| ||||| || || ||||||| ||| ||||||||||| || |||| || Sbjct 676266 ACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGA 676325 Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526 | || |||| ||||| || ||||||||| | || || |||| | || || Sbjct 676326 CTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGAT 676385 Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586 || ||||| || || | || || || || || || || | | ||| || | Sbjct 676386 CAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATA 676445 Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646 | | ||| | ||| |||| |||||| || ||||| ||||| || |||| ||| | Sbjct 676446 TATAAGTGTACTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAG 676505 Query 1647 GACCGGATGTTC 1658 || | |||||| Sbjct 676506 GAAAGAATGTTC 676517 Score = 120 bits (132), Expect = 9e-24 Identities = 242/349 (69%), Gaps = 24/349 (7%) Strand=Plus/Plus Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930 ||||| |||||||||||| | |||| |||| | ||| | || ||||||| | Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATC----TCGTCACCACTTG 677875 Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987 |||| |||| |||| || ||| |||| ||||| | |||||||| || ||| | Sbjct 677876 TTCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGG 677935 Query 2988 CCAATCAGGAGCCTCGAACGACAA-TCA--CTACTTTGGCTACAGCACCCCTTGGGGGTA 3044 ||| ||||| ||||| || |||||| || |||||||||||| ||| || Sbjct 677936 CCAT------GCCTC---CGACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTA 677985 Query 3045 TTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAA 3104 | ||||||| |||||||| ||||||| || || ||||| || | |||||||| Sbjct 677986 CCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAA 678045 Query 3105 CAACAACTGGGGATTCCGACCCAAGAGACT-CAACTTCAAGCTCTTTAACATTCAAGTCA 3163 |||| ||||||| ||||| |||| || | | |||| | || ||||| ||||| | Sbjct 678046 CAACTACTGGGGCATCCGA-CCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTA 678104 Query 3164 AAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTAC 3212 | ||||||| | || | || | | ||| |||||||||||||| || Sbjct 678105 AGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAAC 678153 Score = 80.6 bits (88), Expect = 8e-12 Identities = 187/282 (66%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 4023 GGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACA 4082 ||| | ||| | || || ||||| || || ||||| || ||||| |||| || | | Sbjct 678932 GGATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGACAA 678991 Query 4083 TTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCT 4142 |||||| || ||| |||||| || || || ||||| || ||||| |||||| Sbjct 678992 TTTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATCCACCTCCGATGATTCT 679051 Query 4143 CATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTCAGTGCGGCAAAGTTTGC 4202 || || || || || ||||| | ||| | | |||||| || || || Sbjct 679052 GCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACACCTATTAA 679111 Query 4203 TTCCTTCATCACACAGTACTCCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCA 4262 || || || | ||||| |||| || ||||| | ||||| || || ||||||| | Sbjct 679112 GTCTTTTATTAGTCAGTATCCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAA 679171 Query 4263 GAAGGAAAACAGCAAACGCTGGAATCCCGAAATTCAGTACAC 4304 ||| ||||||||||||| ||||||| || || | ||| Sbjct 679172 ATCAGAATCCAGCAAACGCTGGTATCCCGAGATCCAATTCAC 679213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14858896494060