Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq11495 161 3e-36 >seq11495 Length=911852 Score = 161 bits (178), Expect = 3e-36 Identities = 347/515 (67%), Gaps = 3/515 (1%) Strand=Plus/Plus Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200 |||||| ||| |||| ||||||||| | |||| | || | ||| |||||| |||| Sbjct 676003 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGTTTCCAGTCGG-GGACATCACCA 676061 Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260 | || | | | |||| | | || |||| ||||||| || | || || | Sbjct 676062 AGAACAAGGTGTTCCAACTTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACA 676121 Query 1261 TCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGC 1320 || | | ||||||| | | ||||| ||| | || |||||||| ||| | | Sbjct 676122 TCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGTGCAATGCCATCTGGTTCTACAGAC 676181 Query 1321 CGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACG 1380 | || || || | || || ||||||| ||| || || ||||| || |||| || || | Sbjct 676182 CTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATG 676241 Query 1381 GCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGA 1440 |||| | ||||||||| |||||||||||||| |||| || || || || ||||||| || Sbjct 676242 GCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGA 676301 Query 1441 TCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGG 1500 | ||||||||||| || |||| ||| || |||| ||| || || |||||| ||| Sbjct 676302 TTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGG 676361 Query 1501 GCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACT 1559 | || |||| | || || ||||| || || || | || || ||||| || Sbjct 676362 GTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACG 676421 Query 1560 CCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACC 1619 || || | | ||| || | | | ||| | ||| |||| ||||||||||| ||| Sbjct 676422 CCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACTACC 676481 Query 1620 TTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654 || || ||| || |||| || |||| | ||||| Sbjct 676482 TTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTT 676516 Score = 141 bits (156), Expect = 3e-30 Identities = 246/349 (70%), Gaps = 24/349 (7%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 |||||||||||||||||| | |||| ||||||| || | || ||||||| | Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATC---TCGTCACCACTTGT 677876 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||||||||| |||| || ||| | || ||||| ||||||||||||| || | || Sbjct 677877 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGAT-TAAAGG 677935 Query 2995 CAATCAGGAGCTTCAAACGACAA---CCACTACTTTGGCTACAGCACCCCTTGGGGGTAT 3051 | || || || ||||| | |||||| || |||||||||||| ||| || Sbjct 677936 CCAT-----GCCTC---CGACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTAC 677986 Query 3052 TTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAAC 3111 | |||| || |||||||| ||||||| || || ||||| ||||| ||||| ||| Sbjct 677987 CTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAAC 678046 Query 3112 AACAACTGGGGATTCCGGCCCAAGAAACTC--AGCTTCAAGCTCTTCAACATCCAAGTTA 3169 ||| ||||||| |||| || || | || || |||| | |||||||| ||||||| Sbjct 678047 AACTACTGGGGCATCCGACCAAA--AGCTTGTAGAATCAAAATTTTCAACATACAAGTTA 678104 Query 3170 GAGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 | ||||| | || | |||| | ||| |||||||||||||| || Sbjct 678105 AGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAAC 678153 Score = 134 bits (148), Expect = 4e-28 Identities = 197/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098 ||| | || || || || ||||| ||||| || |||||| |||| |||| | ||||| Sbjct 678939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGACAATTTTCAG 678998 Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158 ||| |||| |||||||||||||| |||||||| ||||| || || ||| Sbjct 678999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAA 679058 Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCAGCCCGGCCAAGT-TTGCTTCATT 4217 |||||||| || || ||| | ||||| || | |||| | || | || || || Sbjct 679059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA-CTGAAACACCTATTAAGTCTTT 679117 Query 4218 TATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGA 4277 ||| | |||||| ||||||| ||||| | ||||||||||| ||||||| | | ||| Sbjct 679118 TATTAGTCAGTATCCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGA 679177 Query 4278 AAACAGCAAACGTTGGAATCCAGAGATTCAGTACAC 4313 | ||||||||| ||| |||| ||||| || | ||| Sbjct 679178 ATCCAGCAAACGCTGGTATCCCGAGATCCAATTCAC 679213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15009277229465