Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq11495 129 2e-26 >seq11495 Length=911852 Score = 129 bits (142), Expect = 2e-26 Identities = 279/408 (68%), Gaps = 22/408 (5%) Strand=Plus/Plus Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028 ||||||||| ||||| | ||| |||| ||||| | |||||||||| || | | || Sbjct 677879 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT---AAAGG 677935 Query 3029 GCCTGCAGTCCAACA------CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACT 3082 | ||| ||| ||| ||||| || | | |||||| |||| ||| | ||| Sbjct 677936 CCATGCC-TCCGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCAACT 677993 Query 3083 TCAACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACT 3142 |||| | ||||| ||||||| || || ||||| ||||| |||||||||||| ||| Sbjct 677994 TCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACT 678053 Query 3143 GGGGCATGCGACCCAAAGCCATGCGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCA 3202 ||||||| ||||| ||||| | ||||||| |||||||| || || |||||||||| Sbjct 678054 GGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 678113 Query 3203 CGACGTCGAACGGCGAGACA-ACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTT 3261 | | | | ||| | | | || | || |||||||| || || | ||||| ||| Sbjct 678114 TGGAGGC-AGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 678172 Query 3262 GCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCA-AGAGGGCAGCCT 3317 || || | ||| | ||||| || ||||| | |||| || ||||| || Sbjct 678173 GCAGATGACACATACCAGCTGCCATATGTGATTGGAAATGC----CACCGAGGGGTGCTC 678228 Query 3318 GCCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365 || |||||||| || || |||||| |||| |||||| | | ||| Sbjct 678229 ACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTACTGGTGCTG 678276 Score = 127 bits (140), Expect = 6e-26 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 ||||| ||| | || |||||||| ||| | || || || || | || || |||| Sbjct 676146 AGTTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACA 676205 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || || ||||| || |||| || || ||||| | |||||||| ||||||| Sbjct 676206 TCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGA 676265 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 ||||||| |||| || || || || ||||||| ||| ||||||||||| || |||| || Sbjct 676266 ACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGA 676325 Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGG 1558 | || |||||||| || || ||||| |||| || Sbjct 676326 CTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGG 676365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15140460424180