Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq11495 170 6e-39 >seq11495 Length=911852 Score = 170 bits (188), Expect = 6e-39 Identities = 273/389 (70%), Gaps = 5/389 (1%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346 ||||||||| | |||| ||| |||| |||||||| | | | || || |||| Sbjct 676131 GCTGGGCCCGGTGGGAGTTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCA 676190 Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406 | ||||||| ||||||| ||| || || ||||| || |||| || || ||||| | | Sbjct 676191 CCAGCAAGACAAACATCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAA 676250 Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466 ||||||| |||||||||||||| |||| ||| || || || ||||||| ||| ||||||| Sbjct 676251 ACTGGACTAATGAGAACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGG 676310 Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG--CAG 1524 |||| || |||| ||| || |||| ||||| || || |||||| | || || | | Sbjct 676311 AGGAAGGAAAGACGACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGG 676370 Query 1525 CAAGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGA 1583 | |||| | || || ||||| || || || | || || || || || || || Sbjct 676371 C--CGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTAC 676428 Query 1584 TCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGC 1643 | | ||| || | | | ||| | ||| |||| ||||||||||| ||||| || | Sbjct 676429 TTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACTACCTTGGAAC 676488 Query 1644 ACCAGCAGCCGTTGCAGGACCGGATGTTC 1672 | || |||| ||| |||| | |||||| Sbjct 676489 ATAAGGAGCCTTTGGAGGAAAGAATGTTC 676517 Score = 107 bits (118), Expect = 6e-20 Identities = 193/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106 |||| |||| | || || ||||| || |||||||| ||||||||| |||| |||| | Sbjct 678933 GATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGACAAT 678992 Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166 ||||| || |||| ||||| |||||||| ||| | || ||||| ||| || Sbjct 678993 TTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATCCACCTCCGATGATTCTG 679052 Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226 ||||| || || || ||||| | ||||| |||| || | | ||| || Sbjct 679053 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACACCTATTAAG 679112 Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286 || || || | || || |||| || || || | ||||||||||| ||||||| | Sbjct 679113 TCTTTTATTAGTCAGTATCCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAA 679172 Query 4287 AAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACACA 4328 |||| |||||| |||||| ||||||| | || | |||| Sbjct 679173 TCAGAATCCAGCAAACGCTGGTATCCCGAGATCCAATTCACA 679214 Score = 100 bits (110), Expect = 9e-18 Identities = 120/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| || ||||||||||| |||| || | | ||||| |||||||| ||||||| Sbjct 677957 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCAACTTCAAGAGATTCCAGTGCCACTG 678015 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 || || ||||| ||||| |||||||||||| | ||||| ||| | |||| || | Sbjct 678016 GAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCC-GACCAAAAGCTT 678074 Query 3158 -CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 | ||||| | |||||||| ||||| |||||||||| Sbjct 678075 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 678113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14983680508545